RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LRRC8BQ6P9F7 803 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 CEACAM20Q6UY09 585 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 SGSM3Q96HU1 749 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 SIDT1Q9NXL6 827 aaKnown RBP23.31■■□□□ 1.32
SHMT1-206ENST00000579558 SNX12Q9UMY4 172 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 LOC400499M0QZD8 3231 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 K7ENP7 123 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 OR1I1O60431 355 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 OR56A5P0C7T3 313 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 MGAT1P26572 445 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 PDHA2P29803 388 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 PPARGP37231 505 aaPredicted RBP23.3■■□□□ 1.32
SHMT1-206ENST00000579558 KCNJ11Q14654 390 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 MANEAQ5SRI9 462 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 INO80CQ6PI98 192 aaPredicted RBP23.3■■□□□ 1.32
SHMT1-206ENST00000579558 CCDC137Q6PK04 289 aaKnown RBP23.3■■□□□ 1.32
SHMT1-206ENST00000579558 OOSP2Q86WS3 158 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 ACTRT1Q8TDG2 376 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 ELMO1Q92556 727 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 FERD3LQ96RJ6 166 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 UBL7Q96S82 380 aaPredicted RBP23.3■■□□□ 1.32
SHMT1-206ENST00000579558 ZPBPQ9BS86 351 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 APMAPQ9HDC9 416 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 CATSPERZQ9NTU4 200 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 SYBUQ9NX95 663 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 ANAPC5Q9UJX4 755 aa23.3■■□□□ 1.32
SHMT1-206ENST00000579558 SMG1Q96Q15 3661 aaKnown RBP23.29■■□□□ 1.32
SHMT1-206ENST00000579558 GOLGA6L10A0A0M3HER8 536 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 OR5K3A6NET4 321 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 USP27XA6NNY8 438 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 F8W8V4 182 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 LIN7AO14910 233 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-206ENST00000579558 POLR1CO15160 346 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-206ENST00000579558 CD151P48509 253 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 ATP1A2P50993 1020 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 SARNPP82979 210 aaKnown RBP23.29■■□□□ 1.32
SHMT1-206ENST00000579558 FOXM1Q08050 763 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 SRSF6Q13247 344 aaKnown RBP23.29■■□□□ 1.32
SHMT1-206ENST00000579558 SEMA3AQ14563 771 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 AARS2Q5JTZ9 985 aaKnown RBP23.29■■□□□ 1.32
SHMT1-206ENST00000579558 VASH2Q86V25 355 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 ACVR1CQ8NER5 493 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 SNRNP27Q8WVK2 155 aaKnown RBP23.29■■□□□ 1.32
SHMT1-206ENST00000579558 TREX1Q9NSU2 369 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 HRASLS2Q9NWW9 162 aa23.29■■□□□ 1.32
SHMT1-206ENST00000579558 OR6C74A6NCV1 312 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 CES2O00748 559 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 ZNF185O15231 689 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 PHF2O75151 1096 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 NMBRP28336 390 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 MAGEA6P43360 314 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 BRD3Q15059 726 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 SYTL3Q4VX76 610 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 SOWAHCQ53LP3 525 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-206ENST00000579558 DNTTIP2Q5QJE6 756 aaKnown RBP23.28■■□□□ 1.32
SHMT1-206ENST00000579558 ARMC6Q6NXE6 501 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 KLHL6Q8WZ60 621 aa23.28■■□□□ 1.32
SHMT1-206ENST00000579558 MRM3Q9HC36 420 aaKnown RBP23.28■■□□□ 1.32
SHMT1-206ENST00000579558 MARCH4Q9P2E8 410 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-206ENST00000579558 CD3EAPO15446 510 aaKnown RBP23.27■■□□□ 1.32
SHMT1-206ENST00000579558 EFSO43281 561 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 SH3BP2P78314 561 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 BOP1Q14137 746 aaKnown RBP23.27■■□□□ 1.32
SHMT1-206ENST00000579558 ANKRD22Q5VYY1 191 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 LDB1Q86U70 411 aaPredicted RBP23.27■■□□□ 1.32
SHMT1-206ENST00000579558 PHC3Q8NDX5 983 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 OR4E2Q8NGC2 313 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 UBXN4Q92575 508 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 TFGQ92734 400 aaPredicted RBP23.27■■□□□ 1.32
SHMT1-206ENST00000579558 NKD1Q969G9 470 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 CD180Q99467 661 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 KIFC1Q9BW19 673 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 MVB12BQ9H7P6 319 aa23.27■■□□□ 1.32
SHMT1-206ENST00000579558 IGSF10Q6WRI0 2623 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 BAHCC1Q9P281 2608 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 IGHV5-51A0A0C4DH38 117 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 RAD1O60671 282 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 ARCN1P48444 511 aaKnown RBP23.26■■□□□ 1.31
SHMT1-206ENST00000579558 FNTAP49354 379 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 TTPAP49638 278 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 NAPRTQ6XQN6 538 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 CACNA2D3Q8IZS8 1091 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 IL22RA1Q8N6P7 574 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 GRK7Q8WTQ7 553 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 LCN9Q8WX39 176 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 CPT1BQ92523 772 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 MFSD3Q96ES6 412 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 BBC3Q96PG8 261 aaPredicted RBP23.26■■□□□ 1.31
SHMT1-206ENST00000579558 OR6C1Q96RD1 312 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 MAP3K3Q99759 626 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 HGH1Q9BTY7 390 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 SRMSQ9H3Y6 488 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 SEMA5BQ9P283 1151 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 SOX13Q9UN79 622 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 NEU2Q9Y3R4 380 aa23.26■■□□□ 1.31
SHMT1-206ENST00000579558 UBA6A0AVT1 1052 aaPredicted RBP23.25■■□□□ 1.31
SHMT1-206ENST00000579558 TLCD2A6NGC4 264 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 AVILO75366 819 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 TMEM63AO94886 807 aa23.25■■□□□ 1.31
SHMT1-206ENST00000579558 TCP1P17987 556 aaKnown RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms