RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 GABARAPO95166 117 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 FKBP9O95302 570 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 ABCB1P08183 1280 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 ALDOCP09972 364 aaKnown RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 KCNE1P15382 129 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 IGFBP5P24593 272 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 NKX3-2P78367 333 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 NRG1Q02297 640 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 MRPL28Q13084 256 aaKnown RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 BTBD8Q5XKL5 378 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 TRIM48Q8IWZ4 208 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PAF1Q8N7H5 531 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 OR2T12Q8NG77 320 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 OR10Q1Q8NGQ4 319 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 FRS2Q8WU20 508 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 TRMOQ9BU70 441 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 ZBTB20Q9HC78 741 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PRDM8Q9NQV8 689 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 ERVK13-1Q9NX77 482 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 KLK14Q9P0G3 267 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 CRNNQ9UBG3 495 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 SNX6Q9UNH7 406 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 TULP3O75386 442 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 MT-CYBP00156 380 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 GRIK1P39086 918 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PSEN2P49810 448 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 RABGGTBP53611 331 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PITX1P78337 314 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 POU4F1Q01851 419 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 RUNX1T1Q06455 604 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PRKG2Q13237 762 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 CRHR2Q13324 411 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 DDR2Q16832 855 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PLEKHG6Q3KR16 790 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PKN3Q6P5Z2 889 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 SLC16A12Q6ZSM3 486 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 SLC38A6Q8IZM9 456 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 TRIB2Q92519 343 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 HBEGFQ99075 208 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 TNFRSF12AQ9NP84 129 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 SCUBE2Q9NQ36 999 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 UCKL1Q9NWZ5 548 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 INTS6Q9UL03 887 aaKnown RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 GABRQQ9UN88 632 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 CCDC182A6NF36 153 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 EFCAB10A6NFE3 127 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 TSPAN4O14817 238 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 CYBBP04839 570 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 ALPLP05186 524 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 LCKP06239 509 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 CYBAP13498 195 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 GPX3P22352 226 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PIGAP37287 484 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 POLR2JP52435 117 aaKnown RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 P2RX3P56373 397 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 CBLBQ13191 982 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 HMGCLL1Q8TB92 370 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PHF10Q8WUB8 498 aaKnown RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 ZFP42Q96MM3 310 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 SNX18Q96RF0 628 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 PAAF1Q9BRP4 392 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 LRRC3Q9BY71 257 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 MAT2BQ9NZL9 334 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 DNAJB9Q9UBS3 223 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 SARDHQ9UL12 918 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 EIF3LQ9Y262 564 aaKnown RBP9.44□□□□□ -0.9
CCDC40-212ENST00000574799 INVSQ9Y283 1065 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 A0A1W2PP18 115 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 DPYSL4O14531 572 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 PRMT5O14744 637 aaPredicted RBP9.43□□□□□ -0.9
CCDC40-212ENST00000574799 DNTTP04053 509 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 CYP11A1P05108 521 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 SLC10A3P09131 477 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 SBK3P0C264 359 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 TCF3P15923 654 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 MAGEA12P43365 314 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 EEFSECP57772 596 aaKnown RBP9.43□□□□□ -0.9
CCDC40-212ENST00000574799 UFM1P61960 85 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 CDK10Q15131 360 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 DCAF4L1Q3SXM0 396 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 TUBA3EQ6PEY2 450 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.43□□□□□ -0.9
CCDC40-212ENST00000574799 DET1Q7L5Y6 550 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 STX19Q8N4C7 294 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 SLC2A6Q9UGQ3 507 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 TTC3P53804 2025 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 CHD9Q3L8U1 2897 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 AGAP5A6NIR3 686 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 CCL22O00626 93 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 DNAJB5O75953 348 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 GLUD2P49448 558 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 GABARAPL2P60520 117 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 ADIGQ0VDE8 80 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 ARHGEF6Q15052 776 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 ANKRD34AQ69YU3 496 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 GDF6Q6KF10 455 aaPredicted RBP9.43□□□□□ -0.9
CCDC40-212ENST00000574799 GCNT7Q6ZNI0 430 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 HIPK1Q86Z02 1210 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 ENKURQ8TC29 256 aa9.43□□□□□ -0.9
CCDC40-212ENST00000574799 SNAPC3Q92966 411 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms