RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ZWILCHQ9H900 591 aa17.49■□□□□ 0.39
CLK3-227ENST00000570296 GDPD2Q9HCC8 539 aa17.49■□□□□ 0.39
CLK3-227ENST00000570296 IMP3Q9NV31 184 aaKnown RBP17.49■□□□□ 0.39
CLK3-227ENST00000570296 TNFRSF10DQ9UBN6 386 aa17.49■□□□□ 0.39
CLK3-227ENST00000570296 SLC24A2Q9UI40 661 aa17.49■□□□□ 0.39
CLK3-227ENST00000570296 PSMD13Q9UNM6 376 aa17.49■□□□□ 0.39
CLK3-227ENST00000570296 CDYLQ9Y232 598 aa17.49■□□□□ 0.39
CLK3-227ENST00000570296 BIN1O00499 593 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 SLC19A2O60779 497 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 ALOX12BO75342 701 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 GFPT2O94808 682 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 HLA-DPA1P20036 260 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 IST1P53990 364 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 OGDHQ02218 1023 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 LTBQ06643 244 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 GALNT3Q14435 633 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 QPCTQ16769 361 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 CLEC16AQ2KHT3 1053 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 KHDC1Q4VXA5 237 aaKnown RBP17.48■□□□□ 0.39
CLK3-227ENST00000570296 ZFYVE27Q5T4F4 411 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 C1orf189Q5VU69 101 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 TMCO3Q6UWJ1 677 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 LINC00696Q6ZRV3 163 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 GPR26Q8NDV2 337 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 DNAJB8Q8NHS0 232 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 SPATA3Q8NHX4 192 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 ADAMTS18Q8TE60 1221 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 EID2BQ96D98 161 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 PCDHB18PQ96TA0 734 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 MDFIQ99750 246 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 PITPNM3Q9BZ71 974 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 NDST4Q9H3R1 872 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 KIR3DX1Q9H7L2 352 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 GPAMQ9HCL2 828 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 PCSK1NQ9UHG2 260 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 RPH3AQ9Y2J0 694 aaPredicted RBP17.48■□□□□ 0.39
CLK3-227ENST00000570296 ZDHHC9Q9Y397 364 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 VPS13CQ709C8 3753 aa17.48■□□□□ 0.39
CLK3-227ENST00000570296 INTS1Q8N201 2190 aaKnown RBP17.47■□□□□ 0.39
CLK3-227ENST00000570296 PRPSAP2O60256 369 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 PRKCSHP14314 528 aaPredicted RBP17.47■□□□□ 0.39
CLK3-227ENST00000570296 ST6GAL1P15907 406 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 POLR2CP19387 275 aaPredicted RBP17.47■□□□□ 0.39
CLK3-227ENST00000570296 MST1P26927 711 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 LMAN1P49257 510 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 FOXL2P58012 376 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 ARG2P78540 354 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 DSC2Q02487 901 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 XRCC4Q13426 336 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 GTF2H3Q13889 308 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 ZFYVE1Q9HBF4 777 aa17.47■□□□□ 0.39
CLK3-227ENST00000570296 GOLGA6L4A6NEF3 574 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 ANKRD66B4E2M5 251 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 SOCS6O14544 535 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 TNFSF10P50591 281 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 TMEM115Q12893 351 aaPredicted RBP17.46■□□□□ 0.39
CLK3-227ENST00000570296 FOXD4Q12950 439 aaPredicted RBP17.46■□□□□ 0.39
CLK3-227ENST00000570296 C3AR1Q16581 482 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 NKAIN1Q4KMZ8 207 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 FAM83HQ6ZRV2 1179 aaPredicted RBP17.46■□□□□ 0.39
CLK3-227ENST00000570296 CYP4V2Q6ZWL3 525 aaPredicted RBP17.46■□□□□ 0.39
CLK3-227ENST00000570296 NINJ1Q92982 152 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 THOC3Q96J01 351 aaKnown RBP17.46■□□□□ 0.39
CLK3-227ENST00000570296 VPS35Q96QK1 796 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 ETNK2Q9NVF9 386 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 HAUS2Q9NVX0 235 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 CDC23Q9UJX2 597 aa17.46■□□□□ 0.39
CLK3-227ENST00000570296 CFAP20Q9Y6A4 193 aaKnown RBP17.46■□□□□ 0.39
CLK3-227ENST00000570296 FN1P02751 2386 aaKnown RBP17.45■□□□□ 0.38
CLK3-227ENST00000570296 ATRQ13535 2644 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 DYTNA2CJ06 578 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 GSAPA4D1B5 854 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 H3BRJ5 948 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 PMPCBO75439 489 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 KLHL18O94889 574 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 PSMA2P25787 234 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 SLC9A5Q14940 896 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 VWA3BQ502W6 1294 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 CDHR3Q6ZTQ4 885 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 LRRC49Q8IUZ0 686 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 TMEM151BQ8IW70 566 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 BRSK1Q8TDC3 778 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 VPS50Q96JG6 964 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 TMEM121Q9BTD3 319 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 XPO4Q9C0E2 1151 aaKnown RBP17.45■□□□□ 0.38
CLK3-227ENST00000570296 MRM3Q9HC36 420 aaKnown RBP17.45■□□□□ 0.38
CLK3-227ENST00000570296 AMACRQ9UHK6 382 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 TINAGQ9UJW2 476 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 MEMO1Q9Y316 297 aa17.45■□□□□ 0.38
CLK3-227ENST00000570296 H3BMH7 237 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 POP7O75817 140 aaKnown RBP17.44■□□□□ 0.38
CLK3-227ENST00000570296 OR2B3O76000 313 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 AMPD1P23109 780 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 PRDX3P30048 256 aaKnown RBP17.44■□□□□ 0.38
CLK3-227ENST00000570296 SERPINB6P35237 376 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 FOLH1Q04609 750 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 TUBB8Q3ZCM7 444 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 KIRREL2Q6UWL6 708 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 HSCBQ8IWL3 235 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms