RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 BRINP1O60477 761 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 RD3LP0DJH9 198 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 JUNBP17275 347 aaPredicted RBP10.68□□□□□ -0.7
CLK3-226ENST00000569406 CDKN2BP42772 138 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 RAP1GAPP47736 663 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 TBX4P57082 545 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 DUSP4Q13115 394 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 FAXCQ5TGI0 409 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 IL31Q6EBC2 164 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 PAMR1Q6UXH9 720 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 SLC16A13Q7RTY0 426 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 NAT8LQ8N9F0 302 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 ZNF527Q8NB42 609 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 CANT1Q8WVQ1 401 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 ZNF566Q969W8 418 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 MCEEQ96PE7 176 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 QKIQ96PU8 341 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLK3-226ENST00000569406 NPAS2Q99743 824 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 HTATIP2Q9BUP3 242 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 MRPL4Q9BYD3 311 aaKnown RBP10.68□□□□□ -0.7
CLK3-226ENST00000569406 CDT1Q9H211 546 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 COA4Q9NYJ1 87 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 ACTR10Q9NZ32 417 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 GJD2Q9UKL4 321 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 OAZ3Q9UMX2 235 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 HTR3BO95264 441 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 NFICP08651 508 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 PTPN7P35236 360 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 CPT1AP50416 773 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 CLCN3P51790 818 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 KCNK10P57789 538 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 CREMQ03060 361 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 ARHGAP1Q07960 439 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 NFX1Q12986 1120 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 TRAF3Q13114 568 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 LRRC26Q2I0M4 334 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 FASTKD1Q53R41 847 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 PAN3Q58A45 887 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 PIK3R6Q5UE93 754 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 ERICH5Q6P6B1 374 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 GADL1Q6ZQY3 521 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 MRPL10Q7Z7H8 261 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 JOSD2Q8TAC2 188 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 FBXO30Q8TB52 745 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 PHF10Q8WUB8 498 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 MYDGFQ969H8 173 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 EXOC2Q96KP1 924 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 KLHL15Q96M94 604 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 MUS81Q96NY9 551 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 NPAS1Q99742 590 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 UNC93B1Q9H1C4 597 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 ZNF768Q9H5H4 540 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 AGAP5A6NIR3 686 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 ACKR2O00590 384 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 BEST1O76090 585 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 CCNDBP1O95273 360 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 MED26O95402 600 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 CXCL8P10145 99 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 RPS3P23396 243 aaKnown RBP eCLIP10.67□□□□□ -0.71e-6■■□□□ 12.2
CLK3-226ENST00000569406 PIK3CBP42338 1070 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 EFNA5P52803 228 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 CDH8P55286 799 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 RNF4P78317 190 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 SLC10A2Q12908 348 aaPredicted RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 ALKBH1Q13686 389 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 DDR2Q16832 855 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 TBCELQ5QJ74 424 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 TEDDM1Q5T9Z0 273 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 MROH9Q5TGP6 573 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 DRICH1Q6PGQ1 229 aaPredicted RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 SUSD1Q6UWL2 747 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 MAVSQ7Z434 540 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 SLC22A9Q8IVM8 553 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 PGAM4Q8N0Y7 254 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 PARP16Q8N5Y8 322 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 OR6M1Q8NGM8 313 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 AHCYL2Q96HN2 611 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 CPXM1Q96SM3 734 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 NIF3L1Q9GZT8 377 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 NIT2Q9NQR4 276 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 PRDM9Q9NQV7 894 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 NRBP2Q9NSY0 501 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 hCG_1818297A0A087WSY0 165 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 BPGMP07738 259 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 TFE3P19532 575 aaPredicted RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 SAT1P21673 171 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 SLC7A1P30825 629 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 STARP49675 285 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 GZMKP49863 264 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 YWHAEP62258 255 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 ORC1Q13415 861 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 FLYWCH1Q4VC44 716 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 MARCH8Q5T0T0 291 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 KIAA1614Q5VZ46 1190 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 DARS2Q6PI48 645 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 MPZL3Q6UWV2 235 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 LINC00299Q6ZSB3 139 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 VN1R5Q7Z5H4 357 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 RASGRP3Q8IV61 690 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 SLCO4A1Q96BD0 722 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms