RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 IPO7O95373 1038 aaKnown RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 ITGALP20701 1170 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 NDUFS1P28331 727 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 KRT33BQ14525 404 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 GPR19Q15760 415 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 GPR33Q49SQ1 333 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 TCTN3Q6NUS6 607 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 LRRC57Q8N9N7 239 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 HM13Q8TCT9 377 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 ZNF501Q96CX3 271 aaPredicted RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 PPM1MQ96MI6 270 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 RUFY1Q96T51 708 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 ACTL8Q9H568 366 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 BTRCQ9Y297 605 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 HEBP2Q9Y5Z4 205 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 IGLV3-16A0A075B6K0 115 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 K7EM74 188 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 CCL22O00626 93 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 CPNE3O75131 537 aaKnown RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 SCRG1O75711 98 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 ZNF189O75820 626 aaPredicted RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 POLR2CP19387 275 aaPredicted RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 PTPN4P29074 926 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 MC4RP32245 332 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 ARCN1P48444 511 aaKnown RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 CDKN1CP49918 316 aaPredicted RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 ZNF75DP51815 510 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 FOXK1P85037 733 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 KLRB1Q12918 225 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 IGFBP7Q16270 282 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 TMTC4Q5T4D3 741 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 KCTD11Q693B1 232 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 FBXO38Q6PIJ6 1188 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 RAD9BQ6WBX8 426 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 ZNF517Q6ZMY9 492 aaPredicted RBP15.65■□□□□ 0.1
CLN3-229ENST00000567963 ACVR1CQ8NER5 493 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 OR8K5Q8NH50 307 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 SEC14L1Q92503 715 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 LRRC45Q96CN5 670 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 MRFAP1L1Q96HT8 127 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 ZDHHC3Q9NYG2 299 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 TRBV5-4A0A0C4DH59 114 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 GRID2IPA4D2P6 1211 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 H7C0S8 307 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 RFPL1O75677 317 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 NR1D1P20393 614 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 ACRV1P26436 265 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 PMS2P54278 862 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 RPS15P62841 145 aaKnown RBP15.64■□□□□ 0.09
CLN3-229ENST00000567963 PRKAA1Q13131 559 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 PARP6Q2NL67 630 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 ZNF658BQ4V348 819 aaPredicted RBP15.64■□□□□ 0.09
CLN3-229ENST00000567963 COLEC12Q5KU26 742 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 TMEM126BQ8IUX1 230 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 APLFQ8IW19 511 aaPredicted RBP15.64■□□□□ 0.09
CLN3-229ENST00000567963 SLC38A9Q8NBW4 561 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 LCN9Q8WX39 176 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 DNAJC1Q96KC8 554 aaKnown RBP15.64■□□□□ 0.09
CLN3-229ENST00000567963 FERD3LQ96RJ6 166 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 OR52A5Q9H2C5 316 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 SRMSQ9H3Y6 488 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 COG4Q9H9E3 785 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 C1GALT1Q9NS00 363 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 NLE1Q9NVX2 485 aaPredicted RBP15.64■□□□□ 0.09
CLN3-229ENST00000567963 SOHLH2Q9NX45 425 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 TLK1Q9UKI8 766 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 POMT2Q9UKY4 750 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 MAN2B2Q9Y2E5 1009 aa15.64■□□□□ 0.09
CLN3-229ENST00000567963 HECTD1Q9ULT8 2610 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 SLC9B1P1A6NJY1 282 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 CYSRT1A8MQ03 144 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 MATN2O00339 956 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 METTL18O95568 372 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 TPH1P17752 444 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 CDH3P22223 829 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 PDHA2P29803 388 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 CD151P48509 253 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 VAV2P52735 878 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 RPS18P62269 152 aaKnown RBP15.63■□□□□ 0.09
CLN3-229ENST00000567963 GPS2Q13227 327 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 SEMA5AQ13591 1074 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 LAMB3Q13751 1172 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 UGT8Q16880 541 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 ZRANB3Q5FWF4 1079 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 ARHGEF18Q6ZSZ5 1173 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 SYVN1Q86TM6 617 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 SERPINA9Q86WD7 417 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 FAM71DQ8N9W8 422 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 TTC13Q8NBP0 860 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 ACRBPQ8NEB7 543 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 COL26A1Q96A83 441 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 TLR10Q9BXR5 811 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 LATS2Q9NRM7 1088 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 AMFRQ9UKV5 643 aa15.63■□□□□ 0.09
CLN3-229ENST00000567963 FARSAQ9Y285 508 aaKnown RBP15.63■□□□□ 0.09
CLN3-229ENST00000567963 FLNCQ14315 2725 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 GOLGA6L9A6NEM1 432 aa15.62■□□□□ 0.09
CLN3-229ENST00000567963 IFRD1O00458 451 aaPredicted RBP15.62■□□□□ 0.09
CLN3-229ENST00000567963 KLK3P07288 261 aaPredicted RBP15.62■□□□□ 0.09
CLN3-229ENST00000567963 PRDX3P30048 256 aaKnown RBP15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms