RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CSHL1Q14406 222 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 SEPT7Q16181 437 aaKnown RBP16.24■□□□□ 0.19
VPS4A-202ENST00000562754 HLA-BQ31612 363 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 AGBL2Q5U5Z8 902 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 LMX1AQ8TE12 382 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 GSDMCQ9BYG8 508 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 UNKQ9C0B0 810 aaKnown RBP16.24■□□□□ 0.19
VPS4A-202ENST00000562754 WWP1Q9H0M0 922 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 ACBD3Q9H3P7 528 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 SYTL2Q9HCH5 934 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 UCKL1Q9NWZ5 548 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 SPASTQ9UBP0 616 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 TBC1D29Q9UFV1 150 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 TLK1Q9UKI8 766 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 PSMD13Q9UNM6 376 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 RUVBL2Q9Y230 463 aaKnown RBP16.24■□□□□ 0.19
VPS4A-202ENST00000562754 WDR37Q9Y2I8 494 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 ACOT9Q9Y305 439 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 EIF3FO00303 357 aaPredicted RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 AQP9O43315 295 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 OPA1O60313 960 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 SNX2O60749 519 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 SYF2O95926 243 aaKnown RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 ENO3P13929 434 aaPredicted RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 BRAFP15056 766 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 ENGP17813 658 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 KRT4P19013 534 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 IDSP22304 550 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 RPL10P27635 214 aaKnown RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 EPHA8P29322 1005 aaPredicted RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 RGS4P49798 205 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 IL2P60568 153 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 PLOD1Q02809 727 aaPredicted RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 SLC18A2Q05940 514 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 BNIP3Q12983 259 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 CYHR1Q6ZMK1 362 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 KANSL1Q7Z3B3 1105 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 CCDC91Q7Z6B0 441 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 TAF8Q7Z7C8 310 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 TBC1D1Q86TI0 1168 aaPredicted RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 PDZD3Q86UT5 571 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 EXOC3L1Q86VI1 746 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 FSTL5Q8N475 847 aaPredicted RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 NKAPQ8N5F7 415 aaKnown RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 SPDYE1Q8NFV5 336 aaPredicted RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 NXNL1Q96CM4 212 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 CABS1Q96KC9 395 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 GPR78Q96P69 363 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 NUSAP1Q9BXS6 441 aaKnown RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 ZDHHC5Q9C0B5 715 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 DPEP2Q9H4A9 486 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 GAREM1Q9H706 876 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 PRDM8Q9NQV8 689 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 ZNF358Q9NW07 568 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 TAAR2Q9P1P5 351 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 GMEB2Q9UKD1 530 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 ACSL5Q9ULC5 683 aa16.23■□□□□ 0.19
VPS4A-202ENST00000562754 NOVA2Q9UNW9 492 aaKnown RBP16.23■□□□□ 0.19
VPS4A-202ENST00000562754 NPEPPSL1A6NEC2 478 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 PDZK1P1A8MUH7 402 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 KHNYNO15037 678 aaKnown RBP16.22■□□□□ 0.19
VPS4A-202ENST00000562754 ZBTB14O43829 449 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 LTA4HP09960 611 aaKnown RBP16.22■□□□□ 0.19
VPS4A-202ENST00000562754 MPC1LP0DKB6 136 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 CD1DP15813 335 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 ACADLP28330 430 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 SLC26A3P40879 764 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 ARRB1P49407 418 aaPredicted RBP16.22■□□□□ 0.19
VPS4A-202ENST00000562754 ELOCQ15369 112 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 AGAP9Q5VTM2 703 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 IL27RAQ6UWB1 636 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 NEK10Q6ZWH5 1172 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 RASGRP3Q8IV61 690 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 SFTPA2Q8IWL1 248 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 PDLIM5Q96HC4 596 aaKnown RBP16.22■□□□□ 0.19
VPS4A-202ENST00000562754 ATP6V1G3Q96LB4 118 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 DERL2Q9GZP9 239 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 STMN4Q9H169 189 aaPredicted RBP16.22■□□□□ 0.19
VPS4A-202ENST00000562754 MKS1Q9NXB0 559 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 SENP1Q9P0U3 644 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 SCHIP1Q9P0W5 487 aaPredicted RBP16.22■□□□□ 0.19
VPS4A-202ENST00000562754 PCOLCE2Q9UKZ9 415 aa16.22■□□□□ 0.19
VPS4A-202ENST00000562754 ARID1BQ8NFD5 2236 aaPredicted RBP16.21■□□□□ 0.19
VPS4A-202ENST00000562754 LNP1A1A4G5 178 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 LMO7DNF2Z398 122 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 CDC7O00311 574 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 SPAG7O75391 227 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 KLHL2O95198 593 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 CER1O95813 267 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 LMNAP02545 664 aaKnown RBP16.21■□□□□ 0.19
VPS4A-202ENST00000562754 SYPP08247 313 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 SLC35G4P0C7Q5 338 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 COL6A2P12110 1019 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 MAGOHP61326 146 aaKnown RBP16.21■□□□□ 0.19
VPS4A-202ENST00000562754 CLCA4Q14CN2 919 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 SF3A2Q15428 464 aaKnown RBP16.21■□□□□ 0.19
VPS4A-202ENST00000562754 UAP1L1Q3KQV9 507 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 CAPRIN2Q6IMN6 1127 aaKnown RBP16.21■□□□□ 0.19
VPS4A-202ENST00000562754 ABRAXAS1Q6UWZ7 409 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 WASH2PQ6VEQ5 465 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms