RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	CRY1	Q16526	586 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	ZNF423	Q2M1K9	1284 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	ZNF284	Q2VY69	593 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	USP39	Q53GS9	565 aa	Known RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	TRIM61	Q5EBN2	209 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	TMEM196	Q5HYL7	178 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	PIP5KL1	Q5T9C9	394 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	ZNF776	Q68DI1	518 aa	Predicted RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	ATG14	Q6ZNE5	492 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	TRPM8	Q7Z2W7	1104 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	PIWIL4	Q7Z3Z4	852 aa	Known RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	RABEPK	Q7Z6M1	372 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	YTHDF3	Q7Z739	585 aa	Known RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	CPNE9	Q8IYJ1	553 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	CHPF	Q8IZ52	775 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	CLDN19	Q8N6F1	224 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	DDHD1	Q8NEL9	900 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	NAT14	Q8WUY8	206 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	EEF1AKMT1	Q8WVE0	214 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	INPP5D	Q92835	1189 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	SCAMP4	Q969E2	229 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	RAB7B	Q96AH8	199 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	SGF29	Q96ES7	293 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	LINGO1	Q96FE5	620 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	PDLIM5	Q96HC4	596 aa	Known RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	TMEM237	Q96Q45	408 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	VPS35	Q96QK1	796 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	GABRG3	Q99928	467 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	SIKE1	Q9BRV8	207 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	RIOK2	Q9BVS4	552 aa	Known RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	TMEM120A	Q9BXJ8	343 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	DRC3	Q9H069	523 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	ABCG8	Q9H221	673 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	FBRS	Q9HAH7	460 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	KCNK13	Q9HB14	408 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	SARS2	Q9NP81	518 aa	Known RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	LATS2	Q9NRM7	1088 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	ABCF3	Q9NUQ8	709 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	KCNK4	Q9NYG8	393 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	KLHL42	Q9P2K6	505 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	MARCO	Q9UEW3	520 aa	Predicted RBP	7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	HAO1	Q9UJM8	370 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	DCTN4	Q9UJW0	460 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	IKZF3	Q9UKT9	509 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	INVS	Q9Y283	1065 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	DNAJC16	Q9Y2G8	782 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	FADS3	Q9Y5Q0	445 aa		7.4	□□□□□ -1.22
TPM1-231	ENST00000561395	TMEM131	Q92545	1883 aa		7.4	□□□□□ -1.23
TPM1-231	ENST00000561395	COL6A6	A6NMZ7	2263 aa		7.4	□□□□□ -1.23
TPM1-231	ENST00000561395	PTPRQ	Q9UMZ3	2332 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395		A0A0G2JND7	137 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	SYCE1L	A8MT33	242 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	FADS2P1	A8MWK0	482 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	CFAP99	D6REC4	459 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	UBXN8	O00124	270 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	CDC7	O00311	574 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	BTN3A1	O00481	513 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	NEMP1	O14524	444 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	AP1G1	O43747	822 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	SYNCRIP	O60506	623 aa	Known RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	MAGEC1	O60732	1142 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	MMP20	O60882	483 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	DCTN3	O75935	186 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	RECQL5	O94762	991 aa	Predicted RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	KIAA0754	O94854	1291 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	AP2A2	O94973	939 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	SNUPN	O95149	360 aa	Known RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	SLC25A14	O95258	325 aa	Predicted RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	APBB3	O95704	486 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	HSPA4L	O95757	839 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	SOD1	P00441	154 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	OR56A5	P0C7T3	313 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	TPBGL	P0DKB5	382 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	KIT	P10721	976 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	MTHFD2	P13995	350 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	ALOX15	P16050	662 aa	Predicted RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	ENG	P17813	658 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	ITGB6	P18564	788 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	DRD1	P21728	446 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	C5AR1	P21730	350 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	BCKDHB	P21953	392 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	MPST	P25325	297 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	AKT1	P31749	480 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	KCNC1	P48547	511 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	DHPS	P49366	369 aa	Predicted RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	RGS4	P49798	205 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	DGKE	P52429	567 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	ARFIP2	P53365	341 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	COPA	P53621	1224 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	RPS14	P62263	151 aa	Known RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	CCDC15	Q0P6D6	951 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	C2orf27A	Q580R0	203 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	CFAP157	Q5JU67	520 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	LDLRAP1	Q5SW96	308 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	AGBL4	Q5VU57	503 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	CCDC121	Q6ZUS5	278 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	TRMT11	Q7Z4G4	463 aa	Known RBP	7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	PHYKPL	Q8IUZ5	450 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	LURAP1L	Q8IV03	231 aa		7.39	□□□□□ -1.23
TPM1-231	ENST00000561395	HDDC3	Q8N4P3	179 aa		7.39	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms