RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 FAM83CQ9BQN1 747 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 BEGAINQ9BUH8 593 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 ZNF696Q9H7X3 374 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 NOL11Q9H8H0 719 aaKnown RBP9.54□□□□□ -0.88
RTF1-206ENST00000560447 SARS2Q9NP81 518 aaKnown RBP9.54□□□□□ -0.88
RTF1-206ENST00000560447 HECAQ9UBI9 543 aaPredicted RBP9.54□□□□□ -0.88
RTF1-206ENST00000560447 DPP7Q9UHL4 492 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 EIF3LQ9Y262 564 aaKnown RBP9.54□□□□□ -0.88
RTF1-206ENST00000560447 BTRCQ9Y297 605 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 INSL6Q9Y581 213 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 ANGPTL3Q9Y5C1 460 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 SNX13Q9Y5W8 968 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 AP4B1Q9Y6B7 739 aa9.54□□□□□ -0.88
RTF1-206ENST00000560447 HTTP42858 3142 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 A0A1W2PRU2 124 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 DHRS12A0PJE2 317 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 NCF1BA6NI72 391 aaPredicted RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 NCF1CA8MVU1 366 aaPredicted RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 CFAP99D6REC4 459 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 LSM1O15116 133 aaKnown RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 KRT6AP02538 564 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 KRT6BP04259 564 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 ASLP04424 464 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 CAPN1P07384 714 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 LINC00271P0C7V0 271 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 UBTFL6P0CB48 400 aaPredicted RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 PABPC1P11940 636 aaKnown RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 NCF1P14598 390 aaPredicted RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 EPB42P16452 691 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 ZNF26P17031 533 aaPredicted RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 RECQLP46063 649 aaPredicted RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 ZFP36L2P47974 494 aaKnown RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 GJA8P48165 433 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 KRT6CP48668 564 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 SPINT3P49223 89 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 CCNHP51946 323 aaPredicted RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 AP1S2P56377 157 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 ECT2LQ008S8 904 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 PPIGQ13427 754 aaKnown RBP eCLIP9.53□□□□□ -0.882e-7■□□□□ 8.5
RTF1-206ENST00000560447 PUS10Q3MIT2 529 aaKnown RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 VPS26BQ4G0F5 336 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 PPP4R4Q6NUP7 873 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 LETMD1Q6P1Q0 360 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 GDPD4Q6W3E5 623 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 Q6ZSR9 355 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 MSANTD1Q6ZTZ1 278 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 HID1Q8IV36 788 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 CMTM8Q8IZV2 173 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 RNF148Q8N7C7 305 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 CDYL2Q8N8U2 506 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 MFSD2AQ8NA29 543 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 OR4F6Q8NGB9 312 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 OR8J3Q8NGG0 315 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 OR52E4Q8NGH9 312 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 WFIKKN2Q8TEU8 576 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 AUTS2Q8WXX7 1259 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 IRF7Q92985 503 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 EME1Q96AY2 570 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 ARMC5Q96C12 935 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 METTL2AQ96IZ6 378 aaKnown RBP9.53□□□□□ -0.88
RTF1-206ENST00000560447 SMIM14Q96QK8 99 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 SLC12A9Q9BXP2 914 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 SLC46A2Q9BY10 475 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 SLC32A1Q9H598 525 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 IPPKQ9H8X2 491 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 CMTM6Q9NX76 183 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 WWOXQ9NZC7 414 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 DKK3Q9UBP4 350 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 MAGEL2Q9UJ55 1249 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 PACSIN3Q9UKS6 424 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 SLC8A2Q9UPR5 921 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 TIMM22Q9Y584 194 aa9.53□□□□□ -0.88
RTF1-206ENST00000560447 PABPN1LA6NDY0 278 aaKnown RBP9.52□□□□□ -0.89
RTF1-206ENST00000560447 NPIPB15A6NHN6 443 aaPredicted RBP9.52□□□□□ -0.89
RTF1-206ENST00000560447 PSMD11O00231 422 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 TAPBPO15533 448 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 AHCYL1O43865 530 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 UGDHO60701 494 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 XYLBO75191 536 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 TULP3O75386 442 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 STK16O75716 305 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 TRIM16O95361 564 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 FESP07332 822 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 SRPRAP08240 638 aaKnown RBP9.52□□□□□ -0.89
RTF1-206ENST00000560447 PABPC4LP0CB38 370 aaKnown RBP9.52□□□□□ -0.89
RTF1-206ENST00000560447 CSF2RAP15509 400 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 TCN1P20061 433 aaPredicted RBP9.52□□□□□ -0.89
RTF1-206ENST00000560447 CYP2A7P20853 494 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 FASP25445 335 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 VARSP26640 1264 aaKnown RBP9.52□□□□□ -0.89
RTF1-206ENST00000560447 AOAHP28039 575 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 MAPK1P28482 360 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 PRDX3P30048 256 aaKnown RBP9.52□□□□□ -0.89
RTF1-206ENST00000560447 HLA-FP30511 346 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 VIPR1P32241 457 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 NNMTP40261 264 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 GCGRP47871 477 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 ERFP50548 548 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 CCR3P51677 355 aa9.52□□□□□ -0.89
RTF1-206ENST00000560447 DIO3P55073 304 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms