RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 U3KQV3 271 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 PRMT5O14744 637 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 TBL1XO60907 577 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 SLC25A14O95258 325 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 CLDN7O95471 211 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ESR1P03372 595 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ZNF182P17025 639 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 RHOAP61586 193 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 PLD1Q13393 1074 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 IMPG1Q17R60 797 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ADGRF1Q5T601 910 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 MSRB3Q8IXL7 192 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 TANKQ92844 425 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ADNPQ9H2P0 1102 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 HEBP1Q9NRV9 189 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 PKP3Q9Y446 797 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 A0A1B0GVM2 712 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 TBKBP1A7MCY6 615 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 UPK3BL1B0FP48 263 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 UPK3BL2E5RIL1 263 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 FCGR1AP12314 374 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 HMOX2P30519 316 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 NKX3-2P78367 333 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 GRIK2Q13002 908 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 LAPTM4AQ15012 233 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 KIAA0040Q15053 153 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 AASDHQ4L235 1098 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 SUSD1Q6UWL2 747 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ANKRD46Q86W74 232 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 BPIFB6Q8NFQ5 453 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ADAMTS16Q8TE57 1224 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 BDH2Q9BUT1 245 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 FANCEQ9HB96 536 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 AASSQ9UDR5 926 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 LIMD1Q9UGP4 676 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ZNF639Q9UID6 485 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 MBD1Q9UIS9 605 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 FAF1Q9UNN5 650 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 PCDHB3Q9Y5E6 796 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 KCNH1O95259 989 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ALBP02768 609 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ALPLP05186 524 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 RPLP2P05387 115 aaKnown RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 CLCN4P51793 760 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 KPNA1P52294 538 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 TMEM179BQ7Z7N9 219 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 APCDD1Q8J025 514 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 DPP10Q8N608 796 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 GTF2H4Q92759 462 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 FEM1AQ9BSK4 669 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 VN1R3Q9BXE9 311 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 TOR3AQ9H497 397 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 ASB8Q9H765 288 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 IL26Q9NPH9 171 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 LMCD1Q9NZU5 365 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.66□□□□□ -0.38
LDLR-207ENST00000558013 VPS51Q9UID3 782 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 CLEC4EQ9ULY5 219 aa12.66□□□□□ -0.38
LDLR-207ENST00000558013 FRMPD3Q5JV73 1810 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 LOC730098B7Z3J9 87 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 AREL1O15033 823 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 AXIN1O15169 862 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 CA12O43570 354 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 BNIP3LO60238 219 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 MYCP01106 439 aaPredicted RBP12.65□□□□□ -0.38
LDLR-207ENST00000558013 SLC10A3P09131 477 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 CDH1P12830 882 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 NEK2P51955 445 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 PHC1P78364 1004 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 ARMC12Q5T9G4 340 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 RFLNAQ6ZTI6 216 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 RNF180Q86T96 592 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 ALDH16A1Q8IZ83 802 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 LIX1Q8N485 282 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 GOLM1Q8NBJ4 401 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 OR2T12Q8NG77 320 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 OSBPL6Q9BZF3 934 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 TNKS2Q9H2K2 1166 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 HIPK3Q9H422 1215 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 CD320Q9NPF0 282 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 PTBP2Q9UKA9 531 aaKnown RBP12.65□□□□□ -0.38
LDLR-207ENST00000558013 PIKFYVEQ9Y2I7 2098 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 C1orf232A0A0U1RR37 186 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 ANXA6P08133 673 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 GGT1P19440 569 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 PSMA3P25788 255 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 HMGCLP35914 325 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 CSKP41240 450 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 FXNQ16595 210 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 CPSF6Q16630 551 aaKnown RBP eCLIP12.65□□□□□ -0.38
LDLR-207ENST00000558013 MEP1AQ16819 746 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 GCNT7Q6ZNI0 430 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 TSPAN33Q86UF1 283 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 ZC3H7AQ8IWR0 971 aaKnown RBP12.65□□□□□ -0.38
LDLR-207ENST00000558013 OSCP1Q8WVF1 389 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 SLC13A3Q8WWT9 602 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 TTLL2Q9BWV7 592 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 AMBRA1Q9C0C7 1298 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 CLPBQ9H078 707 aa12.65□□□□□ -0.38
LDLR-207ENST00000558013 TUBA8Q9NY65 449 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms