RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	GLB1L	Q6UWU2	654 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	OSTM1	Q86WC4	334 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM9C	Q8IZT9	166 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	HJURP	Q8NCD3	748 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ST13P5	Q8NFI4	369 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PPTC7	Q8NI37	304 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	POF1B	Q8WVV4	589 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC13A3	Q8WWT9	602 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TP53INP1	Q96A56	240 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RNFT2	Q96EX2	444 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	AURKB	Q96GD4	344 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRNT1	Q96Q11	434 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TMEM209	Q96SK2	561 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TUBA1C	Q9BQE3	449 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FUNDC2	Q9BWH2	189 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	BEX2	Q9BXY8	128 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FBXO44	Q9H4M3	255 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	BRD9	Q9H8M2	597 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM118A	Q9NWS6	357 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FKBPL	Q9UIM3	349 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRAMEF33	A0A0G2JMD5	474 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCDC162P	A2VCL2	907 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CDC7	O00311	574 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SAP18	O00422	153 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRAMEF10	O60809	474 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	C22orf31	O95567	290 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANXA5	P08758	320 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC35E2B	P0CK96	405 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SDC2	P34741	201 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RCVRN	P35243	200 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MAGEA8	P43361	318 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	INHBC	P55103	352 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PFKP	Q01813	784 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	BCL2L1	Q07817	233 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FOXM1	Q08050	763 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PAFAH1B3	Q15102	231 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR4D1	Q15615	310 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYP2A13	Q16696	494 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPAT3	Q53EU6	434 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SMYD5	Q6GMV2	418 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM117B	Q6P1L5	589 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	HID1	Q8IV36	788 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RAVER1	Q8IY67	606 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CPNE9	Q8IYJ1	553 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005		Q8N9G6	341 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	GRIN3A	Q8TCU5	1115 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC35F5	Q8WV83	523 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CRYGN	Q8WXF5	182 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005		Q96MT0	163 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCM2L	Q9NUG4	571 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MITF	O75030	526 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCNB2	O95067	398 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	AGXT	P21549	392 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC5A2	P31639	672 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	NNMT	P40261	264 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ARPC4	P59998	168 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	NFKB2	Q00653	900 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	NFATC3	Q12968	1075 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TBC1D25	Q3MII6	688 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TIMM50	Q3ZCQ8	353 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	C11orf88	Q6PI97	169 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF517	Q6ZMY9	492 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PLEKHG7	Q6ZR37	379 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MOB2	Q70IA6	237 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	GALNT12	Q8IXK2	581 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	STK40	Q8N2I9	435 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RAB42	Q8N4Z0	105 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	C10orf53	Q8N6V4	93 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	LRRC17	Q8N6Y2	441 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SCAMP5	Q8TAC9	235 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	IPCEF1	Q8WWN9	437 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	REPS1	Q96D71	796 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MYO19	Q96H55	970 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PYURF	Q96I23	114 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	APOLD1	Q96LR9	279 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CAMKK2	Q96RR4	588 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PCYT2	Q99447	389 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRMO	Q9BU70	441 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MRM3	Q9HC36	420 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	INTS7	Q9NVH2	962 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MARCH2	Q9P0N8	246 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FCF1	Q9Y324	198 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRORSD1P	A6NEY8	169 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TSPAN9	O75954	239 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	BEST1	O76090	585 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FGF1	P05230	155 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CD1D	P15813	335 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ITGA2	P17301	1181 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF135	P52742	658 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ACLY	P53396	1101 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CACNG1	Q06432	222 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ELP6	Q0PNE2	266 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	UNC50	Q53HI1	259 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	KRT74	Q7RTS7	529 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRMT11	Q7Z4G4	463 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SYVN1	Q86TM6	617 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF598	Q86UK7	904 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	LRRC52	Q8N7C0	313 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ACVR1C	Q8NER5	493 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZFP90	Q8TF47	636 aa		4.91	□□□□□ -1.62

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