RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 THOP1P52888 689 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 IL2P60568 153 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 SRP54P61011 504 aaKnown RBP10.55□□□□□ -0.72
TDP1-211ENST00000555178 GTF2H3Q13889 308 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 INSCQ1MX18 579 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 KIF19Q2TAC6 998 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 BCL7AQ4VC05 210 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 AGAP9Q5VTM2 703 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 CYHR1Q6ZMK1 362 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 C10orf107Q8IVU9 208 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 CFAP206Q8IYR0 622 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 MFSD2AQ8NA29 543 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 DLG3Q92796 817 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 TSNARE1Q96NA8 513 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 PANX3Q96QZ0 392 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 CAPS2Q9BXY5 557 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 ZCCHC2Q9C0B9 1178 aaKnown RBP10.55□□□□□ -0.72
TDP1-211ENST00000555178 DERL2Q9GZP9 239 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 IL21RQ9HBE5 538 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 UTP6Q9NYH9 597 aaKnown RBP10.55□□□□□ -0.72
TDP1-211ENST00000555178 COPG2Q9UBF2 871 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 WDR37Q9Y2I8 494 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 OTOGLQ3ZCN5 2332 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 ASXL3Q9C0F0 2248 aa10.55□□□□□ -0.72
TDP1-211ENST00000555178 PRR19A6NJB7 356 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 UBXN8O00124 270 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SDC3O75056 442 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 RASGRP1O95267 797 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 FTH1P02794 183 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 HOXC4P09017 264 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 COL6A2P12110 1019 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 ALDH3A1P30838 453 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SKIV2L2P42285 1042 aaKnown RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 NXPH1P58417 271 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 YPEL5P62699 121 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 IL9RQ01113 521 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 CTBSQ01459 385 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 GBX1Q14549 363 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SHBQ15464 509 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 FAM219BQ5XKK7 198 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 UGT3A1Q6NUS8 523 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 RPS27LQ71UM5 84 aaKnown RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 LRRTM4Q86VH4 590 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 CCM2Q9BSQ5 444 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 FAM126AQ9BYI3 521 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 MRPL46Q9H2W6 279 aaKnown RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 ZNF395Q9H8N7 513 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 SYTL2Q9HCH5 934 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 KLC4Q9NSK0 619 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 UCKL1Q9NWZ5 548 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SCHIP1Q9P0W5 487 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 KLQ9UEF7 1012 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 PCDHGA2Q9Y5H1 932 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 CFAP20Q9Y6A4 193 aaKnown RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 EP300Q09472 2414 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 ZNF292O60281 2723 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SLC5A10A0PJK1 596 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 NCF1BA6NI72 391 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 NCF1CA8MVU1 366 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 MAGEC1O60732 1142 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 GPC4O75487 556 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 BPGMP07738 259 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 NCF1P14598 390 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 HK3P52790 923 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SEC24CP53992 1094 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 ARHGAP8P85298 464 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 BNIP3Q12983 259 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 ACAP2Q15057 778 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 TSNAXIP1Q2TAA8 658 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 CCDC153Q494R4 210 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 CCSMST1Q4G0I0 132 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SYTL3Q4VX76 610 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 WDR45BQ5MNZ6 344 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 SBSNQ6UWP8 590 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 MBOAT1Q6ZNC8 495 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 ATG14Q6ZNE5 492 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 NKAPQ8N5F7 415 aaKnown RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 SKA2Q8WVK7 121 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 PATE1Q8WXA2 126 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 ATOH8Q96SQ7 321 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 ARRDC1-AS1Q9H2J1 176 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 LATS2Q9NRM7 1088 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 DNAJC28Q9NX36 388 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 PCM1Q15154 2024 aa10.54□□□□□ -0.72
TDP1-211ENST00000555178 ZFHX2Q9C0A1 2572 aaPredicted RBP10.54□□□□□ -0.72
TDP1-211ENST00000555178 TRBV23OR9-2A0A075B6M9 112 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 LRRC14BA6NHZ5 514 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 VILLO15195 856 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 DLX3O60479 287 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 MTHFD2P13995 350 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 CPA3P15088 417 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 ARRB2P32121 409 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 LSP1P33241 339 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 SLC26A3P40879 764 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 CCR10P46092 362 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 SF3A3Q12874 501 aaKnown RBP eCLIP10.53□□□□□ -0.72
TDP1-211ENST00000555178 ILF2Q12905 390 aaKnown RBP10.53□□□□□ -0.72
TDP1-211ENST00000555178 CHI3L2Q15782 390 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 PHKG1Q16816 387 aa10.53□□□□□ -0.72
TDP1-211ENST00000555178 DUS1LQ6P1R4 473 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms