RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ITM2BQ9Y287 266 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 ANGPTL3Q9Y5C1 460 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 K7EPI3 171 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 AREL1O15033 823 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 FKBP6O75344 327 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 MTX2O75431 263 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 MATN4O95460 622 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 IDO1P14902 403 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 FOSL2P15408 326 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 PIK3CGP48736 1102 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 HSPA14Q0VDF9 509 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 GRIK2Q13002 908 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 TRAF3Q13114 568 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 KIF19Q2TAC6 998 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 PREPLQ4J6C6 727 aaPredicted RBP25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 AAGABQ6PD74 315 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 UBE2R2Q712K3 238 aaPredicted RBP25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 DSG4Q86SJ6 1040 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 ST13P5Q8NFI4 369 aaPredicted RBP25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 OR4F6Q8NGB9 312 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 ASB11Q8WXH4 323 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 SUSD6Q92537 303 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 JADE3Q92613 823 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 NPAS2Q99743 824 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 PLA2G2FQ9BZM2 168 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 PARVBQ9HBI1 364 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 STOML1Q9UBI4 398 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 PDE10AQ9Y233 779 aa25.83■■□□□ 1.73
CCDC88C-205ENST00000553403 GGT5P36269 586 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 RPIAP49247 311 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 ATAT1Q5SQI0 421 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 REP15Q6BDI9 236 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 PAOXQ6QHF9 649 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 HACD2Q6Y1H2 254 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 RNF165Q6ZSG1 346 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 MILR1Q7Z6M3 343 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 METTL6Q8TCB7 284 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 ELSPBP1Q96BH3 223 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 MYADMQ96S97 322 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 SDR39U1Q9NRG7 319 aaPredicted RBP25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 POMPQ9Y244 141 aa25.82■■□□□ 1.72
CCDC88C-205ENST00000553403 BBIP1A8MTZ0 92 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 CAPN1P07384 714 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 PSMC3P17980 439 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 METAP1P53582 386 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 GRM2Q14416 872 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 CCDC6Q16204 474 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 MMEL1Q495T6 779 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 TMEM52BQ4KMG9 183 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 HPS6Q86YV9 775 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 SFTPA1Q8IWL2 248 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 ASZ1Q8WWH4 475 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 ELMO1Q92556 727 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 CDK15Q96Q40 435 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 CDRT15Q96T59 188 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 ACOX2Q99424 681 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 WRAP53Q9BUR4 548 aaKnown RBP25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 DYRK4Q9NR20 520 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 GIMAP2Q9UG22 337 aa25.81■■□□□ 1.72
CCDC88C-205ENST00000553403 C1QTNF3-AMACRE9PGA6 284 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 GFYI3L273 518 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 FBP2O00757 339 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 NRP2O60462 931 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 ADRB3P13945 408 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 CREB5Q02930 508 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 SLC34A1Q06495 639 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 LRP8Q14114 963 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 BOP1Q14137 746 aaKnown RBP25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 PIGGQ5H8A4 983 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 NAIF1Q69YI7 327 aaPredicted RBP25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 RASGRP3Q8IV61 690 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 FUNDC1Q8IVP5 155 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 NTMT1Q9BV86 223 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 AIG1Q9NVV5 245 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 ARL15Q9NXU5 204 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 CACNA2D2Q9NY47 1150 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 GPR45Q9Y5Y3 372 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 STK16O75716 305 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 SLCO2B1O94956 709 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 GRIA2P42262 883 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 IL12RB1P42701 662 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 VRK3Q8IV63 474 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 EPHX3Q9H6B9 360 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 TMEM45AQ9NWC5 275 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 TRPS1Q9UHF7 1281 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 ANGPTL2Q9UKU9 493 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 COL6A3P12111 3177 aa25.8■■□□□ 1.72
CCDC88C-205ENST00000553403 WDR47O94967 919 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 KAT7O95251 611 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 HIST1H2AGP0C0S8 130 aaPredicted RBP25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 HIST1H2ADP20671 130 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 CYP2A7P20853 494 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 HMOX2P30519 316 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 ARL1P40616 181 aaPredicted RBP25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 PRLHRP49683 370 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 HNMTP50135 292 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 AP2B1P63010 937 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 ERVK-8P63133 956 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 RPS6KA2Q15349 733 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms