RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SUSD3Q96L08 255 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 PAK1IP1Q9NWT1 392 aaPredicted RBP17.27■□□□□ 0.35
SYNE3-202ENST00000553340 ORC6Q9Y5N6 252 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 HTR3EA5X5Y0 456 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 TYMPP19971 482 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 RYKP34925 604 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 DCTP40126 519 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 EMX1Q04741 257 aaPredicted RBP17.26■□□□□ 0.35
SYNE3-202ENST00000553340 CD300CQ08708 224 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 KIAA0040Q15053 153 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 RFX4Q33E94 735 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 MIB1Q86YT6 1006 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 OR52E4Q8NGH9 312 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 NSMCE3Q96MG7 304 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 SH3GL1Q99961 368 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 NUDT4Q9NZJ9 180 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 UTS2RQ9UKP6 389 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 PCDHGB1Q9Y5G3 927 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 CXCR6O00574 342 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 TOR1BO14657 336 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 ZNF865P0CJ78 1059 aaPredicted RBP17.26■□□□□ 0.35
SYNE3-202ENST00000553340 CD9P21926 228 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 SERPINB10P48595 397 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 MAPKAPK2P49137 400 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 TTPAP49638 278 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 PPP1R8Q12972 351 aaKnown RBP17.26■□□□□ 0.35
SYNE3-202ENST00000553340 MAPKAPK3Q16644 382 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 DDR2Q16832 855 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 ALG1LQ6GMV1 187 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 OR4F6Q8NGB9 312 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 ZFP90Q8TF47 636 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 FAR1Q8WVX9 515 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 RORBQ92753 470 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 GTF2H4Q92759 462 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 PPP3R2Q96LZ3 170 aa17.26■□□□□ 0.35
SYNE3-202ENST00000553340 E5RI56 91 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 SLC16A6O15403 523 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 OR1I1O60431 355 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 JRKO75564 520 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 TBX18O95935 607 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 CHRNA1P02708 482 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 PRKACGP22612 351 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 ACOX1Q15067 660 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 TRIP4Q15650 581 aaPredicted RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 DGUOKQ16854 277 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 PIANPQ8IYJ0 282 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 ARL10Q8N8L6 244 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 MDGA1Q8NFP4 955 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 FRS2Q8WU20 508 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 ZNF566Q969W8 418 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 PSD2Q9BQI7 771 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 HEPHQ9BQS7 1158 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 PDFQ9HBH1 243 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 NECTIN3Q9NQS3 549 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 FAM32AQ9Y421 112 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 TNPO3Q9Y5L0 923 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 GPR182O15218 404 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 AQP9O43315 295 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 KDM1AO60341 852 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 HMBSP08397 361 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 CNPP09543 421 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 SLC2A4P14672 509 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 HOXD12P35452 270 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 IL5RAQ01344 420 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 CDK5R2Q13319 367 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 IRF5Q13568 498 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 ABRAXAS2Q15018 415 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 PLA2G4EQ3MJ16 856 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 CTSL3PQ5NE16 218 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 PSAPL1Q6NUJ1 521 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 GOLGA7Q7Z5G4 137 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 DCP2Q8IU60 420 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 ZCCHC7Q8N3Z6 543 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 MS4A4AQ96JQ5 239 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 TBCDQ9BTW9 1192 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 TRIT1Q9H3H1 467 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 IKZF5Q9H5V7 419 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 SARS2Q9NP81 518 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 EXD2Q9NVH0 621 aa17.25■□□□□ 0.35
SYNE3-202ENST00000553340 EIF3LQ9Y262 564 aaKnown RBP17.25■□□□□ 0.35
SYNE3-202ENST00000553340 BCKDKO14874 412 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 NADKO95544 446 aaPredicted RBP17.24■□□□□ 0.35
SYNE3-202ENST00000553340 PCBP2Q15366 365 aaKnown RBP eCLIP17.24■□□□□ 0.352e-6■■■■■ 29.7
SYNE3-202ENST00000553340 FAM174BQ3ZCQ3 159 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 ZC3H12BQ5HYM0 836 aaKnown RBP17.24■□□□□ 0.35
SYNE3-202ENST00000553340 TMEM179BQ7Z7N9 219 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 ABI1Q8IZP0 508 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 CADM3Q8N126 398 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 NLGN2Q8NFZ4 835 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 KCNJ9Q92806 393 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 GLMNQ92990 594 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 NCLNQ969V3 563 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 RHBDF1Q96CC6 855 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 UROC1Q96N76 676 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 MGME1Q9BQP7 344 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 MAGIXQ9H6Y5 334 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 ATP13A3Q9H7F0 1226 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 INVSQ9Y283 1065 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 AP3M1Q9Y2T2 418 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 GPC6Q9Y625 555 aaPredicted RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms