RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SLC11A1P49279 550 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ALDH3A2P51648 485 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MLLT10P55197 1068 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CDH4P55283 916 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 GPR17Q13304 367 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 KIAA0040Q15053 153 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 PHKG1Q16816 387 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 FAM174BQ3ZCQ3 159 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 FAM26DQ5JW98 314 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SPANXN4Q5MJ08 99 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MFSD14CQ5VZR4 134 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 XAF1Q6GPH4 301 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CXorf57Q6NSI4 855 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 FAM117BQ6P1L5 589 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 R3HCC1LQ7Z5L2 792 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 TMEM179BQ7Z7N9 219 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 RBM23Q86U06 439 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 BCL7CQ8WUZ0 217 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SNX19Q92543 992 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ACDQ96AP0 544 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 FBXL8Q96CD0 374 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MTFMTQ96DP5 389 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 AURKBQ96GD4 344 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ITCHQ96J02 903 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CSF3RQ99062 836 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 DOK1Q99704 481 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 AMBRA1Q9C0C7 1298 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 LHPPQ9H008 270 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 RNF38Q9H0F5 515 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 P2RY12Q9H244 342 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SLC25A37Q9NYZ2 338 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 LIMD1Q9UGP4 676 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CIDEBQ9UHD4 219 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MAGEL2Q9UJ55 1249 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 DNMT3LQ9UJW3 386 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CDH7Q9ULB5 785 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CCL27Q9Y4X3 112 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 PCDHGA8Q9Y5G5 932 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF106Q9H2Y7 1883 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 TYW5A2RUC4 315 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 K7ERQ8 282 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF701M0R085 212 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 FFAR2O15552 330 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 STC2O76061 302 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 HNRNPCP07910 306 aaKnown RBP eCLIP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 HTR1AP08908 422 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 RAP2AP10114 183 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 THRBP10828 461 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 AGXTP21549 392 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 UGT1A1P22309 533 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 UGT1A4P22310 534 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 HMOX2P30519 316 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 UGT1A3P35503 534 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 UGT1A5P35504 534 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 NAA20P61599 178 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF177Q13360 481 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 PWP1Q13610 501 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CRY1Q16526 586 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MEP1AQ16819 746 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CTU2Q2VPK5 515 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SPATS1Q496A3 300 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SULT1C3Q6IMI6 304 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ANKRD26P1Q6NSI1 321 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 EFL1Q7Z2Z2 1120 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MILR1Q7Z6M3 343 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MSRB3Q8IXL7 192 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 PDZD8Q8NEN9 1154 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 OR2T12Q8NG77 320 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 OR13F1Q8NGS4 319 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MBOAT4Q96T53 435 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 THUMPD3Q9BV44 507 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 TM6SF2Q9BZW4 377 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ING2Q9H160 280 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ABCG8Q9H221 673 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SMPD4Q9NXE4 827 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 NUDT4Q9NZJ9 180 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 IL17CQ9P0M4 197 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 AASSQ9UDR5 926 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CORINQ9Y5Q5 1042 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 GMEB1Q9Y692 573 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 U3KQV3 271 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 PRRC2BQ5JSZ5 2229 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 THSD7BQ9C0I4 1608 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 DOCK6Q96HP0 2047 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 C2orf78A6NCI8 922 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 KRT87PA6NCN2 255 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 MANSC4A6NHS7 340 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 OR6C75A6NL08 312 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 G3V2T6 193 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 H0Y626 953 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 BOLA2-SMG1P6H3BVE0 249 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 ARVCFO00192 962 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 GAPDHSO14556 408 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 DEAF1O75398 565 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PRKD3O94806 890 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 PRSS23O95084 383 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 TRIM16O95361 564 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CPNE6O95741 557 aa7.36□□□□□ -1.23
LIMA1-213ENST00000552720 CST1P01037 141 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms