RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CPA5Q8WXQ8 436 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SDCCAG3Q96C92 435 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF837Q96EG3 531 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SCRN2Q96FV2 425 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 COX14Q96I36 57 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 PPM1MQ96MI6 270 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 TAAR6Q96RI8 345 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CRACR2AQ9BSW2 395 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SLC39A8Q9C0K1 460 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 KLHL25Q9H0H3 589 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ENKD1Q9H0I2 346 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 OR2AG1Q9H205 316 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 RETREG1Q9H6L5 497 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CATSPERBQ9H7T0 1116 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 UCK1Q9HA47 277 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 PDFQ9HBH1 243 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SLC40A1Q9NP59 571 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 GPATCH2LQ9NWQ4 482 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 HRASLS2Q9NWW9 162 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 VPS18Q9P253 973 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 IFT80Q9P2H3 777 aaPredicted RBP4.64□□□□□ -1.67
LIMS1-214ENST00000542845 ATXN10Q9UBB4 475 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 EPHA6Q9UF33 1036 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 NDOR1Q9UHB4 597 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SERTAD3Q9UJW9 196 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 PSMD13Q9UNM6 376 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 NEU3Q9UQ49 428 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 CDYLQ9Y232 598 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 SPTBP11277 2137 aa4.64□□□□□ -1.67
LIMS1-214ENST00000542845 NUP210LQ5VU65 1888 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 OR6C74A6NCV1 312 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 TLCD2A6NGC4 264 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 SLC9B1P1A6NJY1 282 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 FAM227AF5H4B4 570 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 AGPSO00116 658 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 PSMD11O00231 422 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 P4HA2O15460 535 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF749O43361 778 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 KLF4O43474 513 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 NUAK1O60285 661 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 KLF7O75840 302 aaPredicted RBP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 KLHL18O94889 574 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 SLC25A14O95258 325 aaPredicted RBP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 RASAL1O95294 804 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 CLDN7O95471 211 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ZBTB11O95625 1053 aaPredicted RBP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 PYGLP06737 847 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 THBS1P07996 1170 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 INHBBP09529 407 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 PYGMP11217 842 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 IMPDH2P12268 514 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 BMP4P12644 408 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 BRAFP15056 766 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF7P17097 686 aaPredicted RBP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF8P17098 575 aaPredicted RBP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 SLC9A1P19634 815 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 AGAP20933 346 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 CDH3P22223 829 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 IDSP22304 550 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 NME2P22392 152 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 IL4RP24394 825 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 DNASE1P24855 282 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 MST1P26927 711 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 SDC4P31431 198 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 RORAP35398 523 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 HADHAP40939 763 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 HALP42357 657 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 SYKP43405 635 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 PREPP48147 710 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 RENBPP51606 427 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 EPHB1P54762 984 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 MAXP61244 160 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 AP1S1P61966 158 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 FOLH1Q04609 750 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ADCY2Q08462 1091 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ITKQ08881 620 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 NSUN2Q08J23 767 aaKnown RBP eCLIP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 DMPKQ09013 629 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 TRAF2Q12933 501 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 DBN1Q16643 649 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 CCDC14Q49A88 953 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ARMC12Q5T9G4 340 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 CES4AQ5XG92 561 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF324BQ6AW86 544 aaPredicted RBP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 RPUSD3Q6P087 351 aaKnown RBP4.63□□□□□ -1.67
LIMS1-214ENST00000542845 KLHL35Q6PF15 583 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ISLR2Q6UXK2 745 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 SHISA6Q6ZSJ9 500 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 REC114Q7Z4M0 266 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 PPP1R32Q7Z5V6 425 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 SYT9Q86SS6 491 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 KMT5CQ86Y97 462 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 NDUFAF2Q8N183 169 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 UMODL1-AS1Q8N2C9 162 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 AOPEPQ8N6M6 819 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 ACRBPQ8NEB7 543 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 OR6P1Q8NGX9 317 aa4.63□□□□□ -1.67
LIMS1-214ENST00000542845 OR8K5Q8NH50 307 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms