RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 PPP1R12AO14974 1030 aaPredicted RBP17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 SGTAO43765 313 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 ST6GAL1P15907 406 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 HLA-DPA1P20036 260 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 TNFRSF8P28908 595 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 HNRNPH3P31942 346 aaKnown RBP17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 WNT3AP56704 352 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 ITGA9Q13797 1035 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 PTPRCAPQ14761 206 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 PRKD1Q15139 912 aaPredicted RBP17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 IGFL3Q6UXB1 125 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 SPOCD1Q6ZMY3 1216 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 VSIG1Q86XK7 387 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 RAB43Q86YS6 212 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 SLC25A41Q8N5S1 370 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 MRGPRX2Q96LB1 330 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 SYTL2Q9HCH5 934 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 FAM153AQ9UHL3 310 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 ACSL5Q9ULC5 683 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 OTOGQ6ZRI0 2925 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 SMTNL1A8MU46 457 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 F5H423 210 aaPredicted RBP17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 SLC35G4P0C7Q5 338 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 NFKB1P19838 968 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 CYP2A7P20853 494 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 OTX2P32243 289 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 LMAN1P49257 510 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 ZBED6P86452 979 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 KYNUQ16719 465 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 LONRF2Q1L5Z9 754 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 GLT6D1Q7Z4J2 308 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 MRGPREQ86SM8 312 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 DAAM2Q86T65 1068 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 TTC13Q8NBP0 860 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 BLOC1S5Q8TDH9 187 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 CPLX3Q8WVH0 158 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 PITPNM3Q9BZ71 974 aa17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 ZNF552Q9H707 407 aaPredicted RBP17.29■□□□□ 0.36
CLSTN3-214ENST00000542663 MASP2O00187 686 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 BTN3A3O00478 584 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 ZNF749O43361 778 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 EPOP01588 193 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 POLBP06746 335 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 H2AFZP0C0S5 128 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 MSH3P20585 1137 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 PRDX3P30048 256 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 AKT1P31749 480 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 PREPP48147 710 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 ADCY2Q08462 1091 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 WASHC5Q12768 1159 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 PRKAA1Q13131 559 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 MYBPC3Q14896 1274 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 SLC1A5Q15758 541 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 H2AFVQ71UI9 128 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 SRRM1Q8IYB3 904 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 OXNAD1Q96HP4 312 aaPredicted RBP17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 DPH2Q9BQC3 489 aaPredicted RBP17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 ZBTB20Q9HC78 741 aaPredicted RBP17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 HACD3Q9P035 362 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 SAE1Q9UBE0 346 aaPredicted RBP17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 CAPN11Q9UMQ6 739 aa17.28■□□□□ 0.36
CLSTN3-214ENST00000542663 SVILO95425 2214 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 GSAPA4D1B5 854 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 MATN2O00339 956 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 BTN3A1O00481 513 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 SERPINC1P01008 464 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 PVRP15151 417 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 POU3F2P20265 443 aaPredicted RBP17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 NDUFS1P28331 727 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 DYNLT1P63172 113 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 MESDQ14696 234 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 BCL7AQ4VC05 210 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 DCAF10Q5QP82 559 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 CDHR3Q6ZTQ4 885 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 RFX6Q8HWS3 928 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 TMEM151BQ8IW70 566 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 GALNT16Q8N428 558 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 ACVR1CQ8NER5 493 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 ZNF398Q8TD17 642 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 CTNNBL1Q8WYA6 563 aaPredicted RBP17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 LINC00615Q96LM1 132 aaPredicted RBP17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 TRAPPC9Q96Q05 1148 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 DHRS4Q9BTZ2 278 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 MAK16Q9BXY0 300 aaKnown RBP17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 ILKAPQ9H0C8 392 aaPredicted RBP17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 KLHL25Q9H0H3 589 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 SRMSQ9H3Y6 488 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 TMEM63CQ9P1W3 806 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 LCMT1Q9UIC8 334 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 SERTAD3Q9UJW9 196 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 PKP3Q9Y446 797 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 COPG1Q9Y678 874 aaKnown RBP17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 COLEC10Q9Y6Z7 277 aa17.27■□□□□ 0.36
CLSTN3-214ENST00000542663 ANKRD17O75179 2603 aaKnown RBP17.27■□□□□ 0.35
CLSTN3-214ENST00000542663 KLHL33A6NCF5 533 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 C9J4A7 227 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 E7EQ34 232 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 H3BMH7 237 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 PRAMEF1O95521 474 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms