RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 LRCH3Q96II8 777 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 C17orf62Q9BQA9 187 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 PELOQ9BRX2 385 aaKnown RBP8.65□□□□□ -1.03
YBX3-208ENST00000540447 EXO5Q9H790 373 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 FETUBQ9UGM5 382 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 TCRBV7S2A1N4TA0A589 114 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CBY3A6NI87 242 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 H0YGN5 161 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PITPNM1O00562 1244 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SBK2P0C263 348 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 OR56A5P0C7T3 313 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 HLA-FP30511 346 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 NDST2P52849 883 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PPP3R1P63098 170 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 GCNT1Q02742 428 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PTGES3Q15185 160 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 CLPPQ16740 277 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 PPM1JQ5JR12 505 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 METTL2BQ6P1Q9 378 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 KBTBD6Q86V97 674 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SNX29P2Q8IUI4 249 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PHACTR4Q8IZ21 702 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 NKAPQ8N5F7 415 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 CHST4Q8NCG5 386 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 OR10A6Q8NH74 314 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 METTL2AQ96IZ6 378 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 ACTR6Q9GZN1 396 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 ZNF223Q9UK11 482 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 NFS1Q9Y697 457 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 GAKO14976 1311 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 IRS2Q9Y4H2 1338 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 OR6C74A6NCV1 312 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SLC19A2O60779 497 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 AMHP03971 560 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 UROSP10746 265 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 POU2F1P14859 743 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 HPGDP15428 266 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 EPORP19235 508 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 MAGEB1P43366 347 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CDH12P55289 794 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SKP1P63208 163 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 RAPSNQ13702 412 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PTGR1Q14914 329 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CBWD6Q4V339 395 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CBWD3Q5JTY5 395 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CBWD5Q5RIA9 395 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 BBS12Q6ZW61 710 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SLC15A3Q8IY34 581 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 RAVER1Q8IY67 606 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 BBS1Q8NFJ9 593 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SLC38A4Q969I6 547 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SLC7A6OSQ96CW6 309 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 ZDHHC12Q96GR4 267 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 POLR1DQ9Y2S0 133 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SALL1Q9NSC2 1324 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 TNRQ92752 1358 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 A0A1B0GVC2 190 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 AGAP5A6NIR3 686 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CYP27B1O15528 508 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 FAM189A1O60320 539 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SH3BGRLO75368 114 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 RAB4AP20338 218 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 HTR7P34969 479 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 ARCN1P48444 511 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 NRG3P56975 720 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 AP1S1P61966 158 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 VAMP2P63027 116 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 TNFAIP1Q13829 316 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PPP1R3AQ16821 1122 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 FIBCD1Q8N539 461 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 LRRC57Q8N9N7 239 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 BEST4Q8NFU0 473 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 FATE1Q969F0 183 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 MCCC1Q96RQ3 725 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 TM9SF2Q99805 663 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 TRIM2Q9C040 744 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 KCNH7Q9NS40 1196 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 ASF1BQ9NVP2 202 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CKLFQ9UBR5 152 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 MAST1Q9Y2H9 1570 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 BCORL1Q5H9F3 1711 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 FAM86C2PA6NEL3 165 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 RGS9O75916 674 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 GSTM2P28161 218 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PIGFQ07326 219 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CDK10Q15131 360 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 AVPI1Q5T686 147 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CHSY3Q70JA7 882 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SPATA2LQ8IUW3 424 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 NATD1Q8N6N6 113 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 ARL11Q969Q4 196 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SLC39A13Q96H72 371 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 KCNC2Q96PR1 638 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CGRRF1Q99675 332 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 ELL3Q9HB65 397 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 NLKQ9UBE8 527 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 C13orf42A0A1B0GVH6 325 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 A8MX80 341 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SMAD9O15198 467 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 YKT6O15498 198 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms