RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 AFG1LQ8WV93 481 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 USP13Q92995 863 aaPredicted RBP6.53□□□□□ -1.36
USP28-202ENST00000535607 TRIM63Q969Q1 353 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 TMIGD2Q96BF3 282 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 SDCCAG3Q96C92 435 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 AJUBAQ96IF1 538 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 FEM1CQ96JP0 617 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 ZNF778Q96MU6 729 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 SLC2A13Q96QE2 648 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 CTRCQ99895 268 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 RHOBTB2Q9BYZ6 727 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 NDEL1Q9GZM8 345 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 ING2Q9H160 280 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 EPS8L2Q9H6S3 715 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 NOL11Q9H8H0 719 aaKnown RBP6.53□□□□□ -1.36
USP28-202ENST00000535607 LRRC40Q9H9A6 602 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 CISHQ9NSE2 258 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 SMPD3Q9NY59 655 aaPredicted RBP6.53□□□□□ -1.36
USP28-202ENST00000535607 NCKIPSDQ9NZQ3 722 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 BFARQ9NZS9 450 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 ANKMY1Q9P2S6 941 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 PCSK1NQ9UHG2 260 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 EVLQ9UI08 416 aaPredicted RBP6.53□□□□□ -1.36
USP28-202ENST00000535607 SARDHQ9UL12 918 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 TMPRSS11EQ9UL52 423 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 EMCNQ9ULC0 261 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 PNMA8BQ9ULN7 279 aaPredicted RBP6.53□□□□□ -1.36
USP28-202ENST00000535607 CARD8Q9Y2G2 431 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 MTF2Q9Y483 593 aaPredicted RBP6.53□□□□□ -1.36
USP28-202ENST00000535607 PCDHGA2Q9Y5H1 932 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 CEP350Q5VT06 3117 aa6.53□□□□□ -1.36
USP28-202ENST00000535607 A0A096LPK6 155 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 DHRS12A0PJE2 317 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 FAM172BPA6NC97 362 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 FFAR3O14843 346 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 MDM4O15151 490 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 MTSS1O43312 755 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 TSPAN6O43657 245 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 ASNA1O43681 348 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 IDH3BO43837 385 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 ZMPSTE24O75844 475 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 PIAS1O75925 651 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 CPNE6O95741 557 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 ALDOAP04075 364 aaKnown RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 MBL2P11226 248 aaPredicted RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 TCF4P15884 667 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 TFEBP19484 476 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 EEF1B2P24534 225 aaKnown RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 HOXD10P28358 340 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 RBL1P28749 1068 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 EPHA3P29320 983 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 TKTP29401 623 aaKnown RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 MAGEA12P43365 314 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 CCT8P50990 548 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 EFNA5P52803 228 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 LIMK2P53671 638 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 GABARAPL2P60520 117 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 FOXM1Q08050 763 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 FASTKQ14296 549 aaKnown RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 OXA1LQ15070 435 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 PCOLCEQ15113 449 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 ZNF699Q32M78 642 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 SLC36A3Q495N2 470 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 AARS2Q5JTZ9 985 aaKnown RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 KCNT1Q5JUK3 1230 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 FAM102AQ5T9C2 384 aaPredicted RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 CYP4A22Q5TCH4 519 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 SLX4IPQ5VYV7 408 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 SLC9A4Q6AI14 798 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 SPOPLQ6IQ16 392 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 NANOGP8Q6NSW7 305 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 TUBA3EQ6PEY2 450 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 KCTD8Q6ZWB6 473 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 GAREM2Q75VX8 874 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 ARMCX2Q7L311 632 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 GPR155Q7Z3F1 870 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 PIWIL4Q7Z3Z4 852 aaKnown RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 MAVSQ7Z434 540 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 AKAP14Q86UN6 197 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 TBC1D21Q8IYX1 336 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 SLC15A4Q8N697 577 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 ATP6V0D2Q8N8Y2 350 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 CYGBQ8WWM9 190 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 LRTOMTQ8WZ04 291 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 LPGAT1Q92604 370 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 ATP6V1E2Q96A05 226 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 MCRS1Q96EZ8 462 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 CERS2Q96G23 380 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 KLHL32Q96NJ5 620 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 RDH12Q96NR8 316 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 PPP1R2P1Q96PQ5 205 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 QKIQ96PU8 341 aaKnown RBP eCLIP6.52□□□□□ -1.37
USP28-202ENST00000535607 CPXM1Q96SM3 734 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 RBBP8Q99708 897 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 CIB1Q99828 191 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 BDH2Q9BUT1 245 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 FTHL17Q9BXU8 183 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 POLR3FQ9H1D9 316 aaPredicted RBP6.52□□□□□ -1.37
USP28-202ENST00000535607 OR10A2Q9H208 303 aa6.52□□□□□ -1.37
USP28-202ENST00000535607 TPK1Q9H3S4 243 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms