RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TATDN1Q6P1N9 297 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 WDR5BQ86VZ2 330 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 PLD5Q8N7P1 536 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 MIGA1Q8NAN2 632 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 TNIP2Q8NFZ5 429 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 WFIKKN2Q8TEU8 576 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 NCSTNQ92542 709 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 CFAP53Q96M91 514 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 TEFMQ96QE5 360 aaKnown RBP3.9□□□□□ -1.79
CD44-235ENST00000532339 SERINC2Q96SA4 455 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 FIZ1Q96SL8 496 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 TEX13BQ9BXU2 312 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 GHITMQ9H3K2 345 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 TTC12Q9H892 705 aaPredicted RBP3.9□□□□□ -1.79
CD44-235ENST00000532339 TMEM9BQ9NQ34 198 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 SMYD2Q9NRG4 433 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 NSMCE4AQ9NXX6 385 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 KCND2Q9NZV8 630 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 EPS15L1Q9UBC2 864 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 TBC1D29Q9UFV1 150 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 LAS1LQ9Y4W2 734 aaKnown RBP3.9□□□□□ -1.79
CD44-235ENST00000532339 PSAT1Q9Y617 370 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 CACNA1EQ15878 2313 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 OTOGQ6ZRI0 2925 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 SPTBN1Q01082 2364 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 TSC2P49815 1807 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 A0A0A0MQY5 61 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 IGHV4-28A0A0C4DH34 117 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 LNP1A1A4G5 178 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 HIDE1A8MVS5 230 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 FIBPO43427 364 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 SERPINI2O75830 405 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 CLDN7O95471 211 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 CHRM4P08173 479 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 ACADMP11310 421 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 PSMA4P25789 261 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 HOXD13P35453 343 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 SKIV2L2P42285 1042 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 CLNS1AP54105 237 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 ARF3P61204 181 aaPredicted RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 UFM1P61960 85 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 TUBA1BP68363 451 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 ARF1P84077 181 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 EEF1A2Q05639 463 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 SLC39A14Q15043 492 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 SLC18A3Q16572 532 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 LETM2Q2VYF4 491 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 KRTAP27-1Q3LI81 207 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 PLPP4Q5VZY2 271 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 ATG9BQ674R7 924 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 NCAPH2Q6IBW4 605 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 TCEAL6Q6IPX3 200 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 CPLX4Q7Z7G2 160 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 ZNF329Q86UD4 541 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 PI4KAP1Q8N8J0 262 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 TEX45Q8NA69 505 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 SETD9Q8NE22 299 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 SNRNP27Q8WVK2 155 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 CNOT9Q92600 299 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 TCEAL3Q969E4 200 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 ERP27Q96DN0 273 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 KIF1BPQ96EK5 621 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 PERPQ96FX8 193 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 SDF4Q9BRK5 362 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 CENPOQ9BU64 300 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 NPLQ9BXD5 320 aaPredicted RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 PDCL3Q9H2J4 239 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 RETREG1Q9H6L5 497 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 DDX31Q9H8H2 851 aaKnown RBP3.89□□□□□ -1.79
CD44-235ENST00000532339 POLG2Q9UHN1 485 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 KIAA1217Q5T5P2 1943 aa3.89□□□□□ -1.79
CD44-235ENST00000532339 NBEAL1Q6ZS30 2694 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 DENND4AQ7Z401 1863 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 MGAQ8IWI9 3026 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 A0A087WYN8 130 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 A0A1W2PRG0 241 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 CHL1O00533 1208 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 AHCYL1O43865 530 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 HBP1O60381 514 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 TIPRLO75663 272 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 DAOP14920 347 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 ABCD1P33897 745 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 ARL1P40616 181 aaPredicted RBP3.88□□□□□ -1.79
CD44-235ENST00000532339 PTPN9P43378 593 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 CXCL12P48061 93 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 EFNA5P52803 228 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 RPS3AP61247 264 aaKnown RBP3.88□□□□□ -1.79
CD44-235ENST00000532339 EFNB1P98172 346 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 TRAF3Q13114 568 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 DCTN2Q13561 401 aaKnown RBP3.88□□□□□ -1.79
CD44-235ENST00000532339 FBXO43Q4G163 708 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 SLC9B1Q4ZJI4 515 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 WBP2NLQ6ICG8 309 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 CACNA2D4Q7Z3S7 1137 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 TRIM74Q86UV6 250 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 TRIM73Q86UV7 250 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 TMC8Q8IU68 726 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 FBXO16Q8IX29 292 aaPredicted RBP3.88□□□□□ -1.79
CD44-235ENST00000532339 TEX11Q8IYF3 940 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 SCAIQ8N9R8 606 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms