RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PTPN7P35236 360 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 ADRA1AP35348 466 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 PMS2P54278 862 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 OLIG2Q13516 323 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 SPARCL1Q14515 664 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 GPR19Q15760 415 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 IGFBP7Q16270 282 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 GPR33Q49SQ1 333 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 ZRANB3Q5FWF4 1079 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 CERS6Q6ZMG9 384 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 ASB18Q6ZVZ8 466 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 SNX20Q7Z614 316 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 KIAA1328Q86T90 577 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 D2HGDHQ8N465 521 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 ACVR1CQ8NER5 493 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 OR13C4Q8NGS5 318 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 COL26A1Q96A83 441 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 LINC00615Q96LM1 132 aaPredicted RBP14.36□□□□□ -0.11
VPS28-215ENST00000531924 RMDN2Q96LZ7 410 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 SLC7A5P2Q9GIP4 190 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 SOWAHDA6NJG2 315 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 FURINP09958 794 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 PTPN4P29074 926 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 MC4RP32245 332 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 FOXK1P85037 733 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 CAPRIN2Q6IMN6 1127 aaKnown RBP14.35□□□□□ -0.11
VPS28-215ENST00000531924 TCTN3Q6NUS6 607 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 FAM199XQ6PEV8 388 aaPredicted RBP14.35□□□□□ -0.11
VPS28-215ENST00000531924 TMEM135Q86UB9 458 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 HOOK3Q86VS8 718 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 ATCAYQ86WG3 371 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 UBL4BQ8N7F7 174 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 TTC13Q8NBP0 860 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 THAP4Q8WY91 577 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 GORASP1Q9BQQ3 440 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 ZDHHC3Q9NYG2 299 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 TLK1Q9UKI8 766 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 HECTD1Q9ULT8 2610 aa14.35□□□□□ -0.11
VPS28-215ENST00000531924 C17orf113A0A1B0GUU1 675 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 SLC9B1P1A6NJY1 282 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 CCL22O00626 93 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 PREPP48147 710 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 PRLHRP49683 370 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 KPNA2P52292 529 aaKnown RBP14.34□□□□□ -0.11
VPS28-215ENST00000531924 ZNF140P52738 457 aaPredicted RBP14.34□□□□□ -0.11
VPS28-215ENST00000531924 GSDMDP57764 484 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 XIAPP98170 497 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 PARP6Q2NL67 630 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 COLEC12Q5KU26 742 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 FBXO38Q6PIJ6 1188 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 PEX26Q7Z412 305 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 SYVN1Q86TM6 617 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 TXLNBQ8N3L3 684 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 FAM71DQ8N9W8 422 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 CPT1BQ92523 772 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 CLIP3Q96DZ5 547 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 C19orf43Q9BQ61 176 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 TLR10Q9BXR5 811 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 C1GALT1Q9NS00 363 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 AMFRQ9UKV5 643 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 FARSAQ9Y285 508 aaKnown RBP14.34□□□□□ -0.11
VPS28-215ENST00000531924 DUSP10Q9Y6W6 482 aa14.34□□□□□ -0.11
VPS28-215ENST00000531924 RCCD1A6NED2 376 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 BTNL10A8MVZ5 291 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 GAS8O95995 478 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 TPH1P17752 444 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 NR1D1P20393 614 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 CYP2A7P20853 494 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 RPS18P62269 152 aaKnown RBP14.33□□□□□ -0.12
VPS28-215ENST00000531924 UGT8Q16880 541 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 P3H1Q32P28 736 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 SERPINA9Q86WD7 417 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 SYCE1Q8N0S2 351 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 LILRA3Q8N6C8 439 aaPredicted RBP14.33□□□□□ -0.12
VPS28-215ENST00000531924 N4BP2L2Q92802 583 aaPredicted RBP14.33□□□□□ -0.12
VPS28-215ENST00000531924 ZNF501Q96CX3 271 aaPredicted RBP14.33□□□□□ -0.12
VPS28-215ENST00000531924 DNAJC1Q96KC8 554 aaKnown RBP14.33□□□□□ -0.12
VPS28-215ENST00000531924 MVB12BQ9H7P6 319 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 LRRC40Q9H9A6 602 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 COG4Q9H9E3 785 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 ARNT2Q9HBZ2 717 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 SYTL2Q9HCH5 934 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 ACSS2Q9NR19 701 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 LATS2Q9NRM7 1088 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 SERTAD3Q9UJW9 196 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 POMT2Q9UKY4 750 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 G3BP2Q9UN86 482 aaKnown RBP14.33□□□□□ -0.12
VPS28-215ENST00000531924 BTRCQ9Y297 605 aa14.33□□□□□ -0.12
VPS28-215ENST00000531924 AGAP14A8MT82 685 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 MEN1O00255 615 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 DDX3YO15523 660 aaKnown RBP14.32□□□□□ -0.12
VPS28-215ENST00000531924 PSMD3O43242 534 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 LDB2O43679 373 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 SGTAO43765 313 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 ACRV1P26436 265 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 CD151P48509 253 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 ZNF75DP51815 510 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 PGDP52209 483 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 VAV2P52735 878 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 CACNG1Q06432 222 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms