RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 WBP2Q969T9 261 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 CENPOQ9BU64 300 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 AP1M1Q9BXS5 423 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 TEX12Q9BXU0 123 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 TXLNGYQ9BZA5 131 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 BICC1Q9H694 974 aaKnown RBP4.32□□□□□ -1.72
CD44-223ENST00000526553 SLA2Q9H6Q3 261 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 SCRT2Q9NQ03 307 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 DDX43Q9NXZ2 648 aaKnown RBP4.32□□□□□ -1.72
CD44-223ENST00000526553 NFKBIL1Q9UBC1 381 aaPredicted RBP4.32□□□□□ -1.72
CD44-223ENST00000526553 SEC63Q9UGP8 760 aaKnown RBP4.32□□□□□ -1.72
CD44-223ENST00000526553 PCDHGA5Q9Y5G8 931 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 ASTN2O75129 1339 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 LNP1A1A4G5 178 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 RSL1D1O76021 490 aaKnown RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 BEST1O76090 585 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 CSPG5O95196 566 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 MMP9P14780 707 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 CKMT2P17540 419 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 GNAZP19086 355 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 IL11P20809 199 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 SLC15A1P46059 708 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 ATP12AP54707 1039 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 MFAP4P55083 255 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 IFI35P80217 286 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 CXCL9Q07325 125 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 GCNT6Q5T4J0 391 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 ADALQ6DHV7 355 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 NAA16Q6N069 864 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 ARHGAP11AQ6P4F7 1023 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 KLC3Q6P597 504 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 C17orf53Q8N3J3 647 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 OR2T12Q8NG77 320 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 SAT2Q96F10 170 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 ZNF582Q96NG8 517 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 LITAFQ99732 161 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 BAG1Q99933 345 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 BARHL1Q9BZE3 327 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 SLC52A3Q9NQ40 469 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 MBNL1Q9NR56 388 aaKnown RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 SUCLA2Q9P2R7 463 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 CHORDC1Q9UHD1 332 aaPredicted RBP4.31□□□□□ -1.72
CD44-223ENST00000526553 PCDHGB4Q9UN71 923 aa4.31□□□□□ -1.72
CD44-223ENST00000526553 KIAA1210Q9ULL0 1709 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 CCER2I3L3R5 266 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 NTN3O00634 580 aaPredicted RBP4.3□□□□□ -1.72
CD44-223ENST00000526553 PAPSS1O43252 624 aaPredicted RBP4.3□□□□□ -1.72
CD44-223ENST00000526553 APOHP02749 345 aaPredicted RBP4.3□□□□□ -1.72
CD44-223ENST00000526553 PRSS56P0CW18 603 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 LIFP15018 202 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 ACSL1P33121 698 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 EIF2DP41214 584 aaKnown RBP4.3□□□□□ -1.72
CD44-223ENST00000526553 SUOXP51687 545 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 THOP1P52888 689 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 PNLIPRP2P54317 469 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 DLG2Q15700 870 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 KRTAP27-1Q3LI81 207 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 SPECC1Q5M775 1068 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 DENND5BQ6ZUT9 1274 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 INTS8Q75QN2 995 aaKnown RBP4.3□□□□□ -1.72
CD44-223ENST00000526553 PLD3Q8IV08 490 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 TMEM190Q8WZ59 177 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 SLC47A1Q96FL8 570 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 MXD3Q9BW11 206 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 RTN4RQ9BZR6 473 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 HHATLQ9HCP6 504 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 C2orf42Q9NWW7 574 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 TAS2R14Q9NYV8 317 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 COQ3Q9NZJ6 369 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 NOL7Q9UMY1 257 aaKnown RBP4.3□□□□□ -1.72
CD44-223ENST00000526553 C2CD2Q9Y426 696 aa4.3□□□□□ -1.72
CD44-223ENST00000526553 FLT1P17948 1338 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 CLIC2O15247 247 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 ERAL1O75616 437 aaKnown RBP4.29□□□□□ -1.72
CD44-223ENST00000526553 PGM3O95394 542 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 CGAP01215 116 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 ADRB2P07550 413 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 SAT1P21673 171 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 CBLP22681 906 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 LMAN1P49257 510 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 MRPL12P52815 198 aaKnown RBP4.29□□□□□ -1.72
CD44-223ENST00000526553 PMP22Q01453 160 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 MELKQ14680 651 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 FAM98BQ52LJ0 330 aaKnown RBP4.29□□□□□ -1.72
CD44-223ENST00000526553 ADGRA1Q86SQ6 560 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 CRYBG2Q8N1P7 616 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 NKAIN3Q8N8D7 197 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 CCDC191Q8NCU4 936 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 TAS1R2Q8TE23 839 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 UBE2Q2Q8WVN8 375 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 SENP5Q96HI0 755 aaPredicted RBP4.29□□□□□ -1.72
CD44-223ENST00000526553 PSD2Q9BQI7 771 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 FSD1Q9BTV5 496 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 OLFML3Q9NRN5 406 aa4.29□□□□□ -1.72
CD44-223ENST00000526553 WSB2Q9NYS7 404 aaPredicted RBP4.29□□□□□ -1.72
CD44-223ENST00000526553 A0A1W2PQ09 198 aa4.28□□□□□ -1.72
CD44-223ENST00000526553 MED19A0JLT2 244 aaPredicted RBP4.28□□□□□ -1.72
CD44-223ENST00000526553 DUXAA6NLW8 204 aa4.28□□□□□ -1.72
CD44-223ENST00000526553 TO15178 435 aa4.28□□□□□ -1.72
CD44-223ENST00000526553 SLC22A2O15244 555 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms