RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TIMM29Q9BSF4 260 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 NAT9Q9BTE0 207 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 DDA1Q9BW61 102 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 DPH5Q9H2P9 285 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 FAM96AQ9H5X1 160 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 TREX1Q9NSU2 369 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 STARD5Q9NSY2 213 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 CATSPERZQ9NTU4 200 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 ZDHHC3Q9NYG2 299 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 WHRNQ9P202 907 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 PLEKHM1Q9Y4G2 1056 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 PCDHGA3Q9Y5H0 932 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 MAD1L1Q9Y6D9 718 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 MAST4O15021 2626 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 OR51F1A6NGY5 319 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 F8W8V4 182 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 DUX1O43812 170 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 KCNJ13O60928 360 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 USP1O94782 785 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 PGAM1P18669 254 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 MPSTP25325 297 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 CA5AP35218 305 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 FASLGP48023 281 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 NFKB2Q00653 900 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 DHX9Q08211 1270 aaKnown RBP9.94□□□□□ -0.82
VPS28-204ENST00000526054 DBN1Q16643 649 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 TBR1Q16650 682 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 HIF1AQ16665 826 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 INSCQ1MX18 579 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 PLA2G4EQ3MJ16 856 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 BBS9Q3SYG4 887 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 DUPD1Q68J44 220 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 CERS6Q6ZMG9 384 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 ATG14Q6ZNE5 492 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 CHST15Q7LFX5 561 aaPredicted RBP9.94□□□□□ -0.82
VPS28-204ENST00000526054 ZNF761Q86XN6 746 aaPredicted RBP9.94□□□□□ -0.82
VPS28-204ENST00000526054 MMGT1Q8N4V1 131 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 RASGEF1AQ8N9B8 481 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 OR10G6Q8NH81 332 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 SLC37A2Q8TED4 501 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 NKD1Q969G9 470 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 MFSD3Q96ES6 412 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 AHCYL2Q96HN2 611 aaKnown RBP9.94□□□□□ -0.82
VPS28-204ENST00000526054 SIGLEC10Q96LC7 697 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 SLC38A3Q99624 504 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 STN1Q9H668 368 aaKnown RBP9.94□□□□□ -0.82
VPS28-204ENST00000526054 TMEM9Q9P0T7 183 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 PRKAB1Q9Y478 270 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 B3GALT1Q9Y5Z6 326 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 RPS6KL1Q9Y6S9 549 aa9.94□□□□□ -0.82
VPS28-204ENST00000526054 COL12A1Q99715 3063 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 IGLV3-16A0A075B6K0 115 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 KLHL33A6NCF5 533 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 OR2AG2A6NM03 316 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 EFCAB7A8K855 629 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 QSOX1O00391 747 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 PFDN6O15212 129 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 VAPBO95292 243 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 TTC4O95801 387 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 POLBP06746 335 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 PRSS56P0CW18 603 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 ATP1B2P14415 290 aaPredicted RBP9.93□□□□□ -0.82
VPS28-204ENST00000526054 SLC2A4P14672 509 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 LIFP15018 202 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 ZNF7P17097 686 aaPredicted RBP9.93□□□□□ -0.82
VPS28-204ENST00000526054 ITGB6P18564 788 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 NSG1P42857 185 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 TTPAP49638 278 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 CDKN1CP49918 316 aaPredicted RBP9.93□□□□□ -0.82
VPS28-204ENST00000526054 CSRP3P50461 194 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 CLCNKAP51800 687 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 CTSCP53634 463 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 RAB15P59190 212 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 HHEXQ03014 270 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 CAV1Q03135 178 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 SQSTM1Q13501 440 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 ANKRD20A4Q4UJ75 823 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 BCL7AQ4VC05 210 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 FNBP1LQ5T0N5 605 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 DCAF12Q5T6F0 453 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 MRNIPQ6NTE8 343 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 TMEM71Q6P5X7 295 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 TMEM220Q6QAJ8 160 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 CES3Q6UWW8 571 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 PACS1Q6VY07 963 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 DET1Q7L5Y6 550 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 TMEM135Q86UB9 458 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 PIANPQ8IYJ0 282 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 SFRP1Q8N474 314 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 GABPB2Q8TAK5 448 aaPredicted RBP9.93□□□□□ -0.82
VPS28-204ENST00000526054 COL26A1Q96A83 441 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 LRRC39Q96DD0 335 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 EBNA1BP2Q99848 306 aaKnown RBP9.93□□□□□ -0.82
VPS28-204ENST00000526054 LRRC1Q9BTT6 524 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 ASPSCR1Q9BZE9 553 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 OSGEPL1Q9H4B0 414 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 VPS37BQ9H9H4 285 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 L2HGDHQ9H9P8 463 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 KLC4Q9NSK0 619 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 SLC39A1Q9NY26 324 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms