RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TMEM163Q8TC26 289 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 KCNE4Q8WWG9 221 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 PRPF31Q8WWY3 499 aaKnown RBP4.73□□□□□ -1.65
CD44-220ENST00000525688 FBXL8Q96CD0 374 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 ZC3HAV1LQ96H79 300 aaKnown RBP4.73□□□□□ -1.65
CD44-220ENST00000525688 FAM111AQ96PZ2 611 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 TBCDQ9BTW9 1192 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 CCDC94Q9BW85 323 aaPredicted RBP4.73□□□□□ -1.65
CD44-220ENST00000525688 QTRT1Q9BXR0 403 aaKnown RBP4.73□□□□□ -1.65
CD44-220ENST00000525688 TKTL2Q9H0I9 626 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 YY1AP1Q9H869 796 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 MAP6D1Q9H9H5 199 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 MAGEE1Q9HCI5 957 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 TMEM184CQ9NVA4 438 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 ATAD3AQ9NVI7 634 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 CNOT8Q9UFF9 292 aaKnown RBP4.73□□□□□ -1.65
CD44-220ENST00000525688 TRPV2Q9Y5S1 764 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 CCDC7Q96M83 1385 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 THSD7AQ9UPZ6 1657 aa4.73□□□□□ -1.65
CD44-220ENST00000525688 MAP3K19Q56UN5 1328 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 BLMP54132 1417 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 A6NNC1 897 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 BTBD18B2RXH4 712 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 MDM4O15151 490 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 POLR3GO15318 223 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 SLC25A12O75746 678 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 PSMD10O75832 226 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 EPN2O95208 641 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 IFNA2P01563 188 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 INHBAP08476 426 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 RHOXF2BP0C7M4 288 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SUPT20HL2P0C7V6 817 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ETFAP13804 333 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SELLP14151 372 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 FDPSP14324 419 aaKnown RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 ZNF182P17025 639 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 GABRB1P18505 474 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 HOXD9P28356 352 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 GDI1P31150 447 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 HOXC9P31274 260 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 CLCN5P51795 746 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ATXN3P54252 364 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 F2RL1P55085 397 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ARF5P84085 180 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 PPATQ06203 517 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SCN1BQ07699 218 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SRSF1Q07955 248 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-220ENST00000525688 KIF5AQ12840 1032 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 NPRL3Q12980 569 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ZBTB17Q13105 803 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 PTK6Q13882 451 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 TUBB2AQ13885 445 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 RCN2Q14257 317 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 PCLAFQ15004 111 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ASTE1Q2TB18 679 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 HFEQ30201 348 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 KRTAP15-1Q3LI76 137 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 PRAMEF19Q5SWL8 479 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 PM20D1Q6GTS8 502 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 HMBOX1Q6NT76 420 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ZCCHC12Q6PEW1 402 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ZYG11AQ6WRX3 759 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 NOXA1Q86UR1 476 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SYCP3Q8IZU3 236 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 FBXW8Q8N3Y1 598 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 DCLK2Q8N568 766 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 BEST2Q8NFU1 509 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 CASP10Q92851 521 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 OTULINQ96BN8 352 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 COQ8BQ96D53 544 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SLC41A2Q96JW4 573 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 NLRP4Q96MN2 994 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 CTAGE1Q96RT6 745 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SEPT5Q99719 369 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 SH3GL2Q99962 352 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 FAM110AQ9BQ89 295 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 WDR77Q9BQA1 342 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 RHOXF2Q9BQY4 288 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SLC39A3Q9BRY0 314 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 NAA11Q9BSU3 229 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 TUBB2BQ9BVA1 445 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 UTP14AQ9BVJ6 771 aaKnown RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 C1QTNF5Q9BXJ0 243 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 KRTAP9-9Q9BYP9 154 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 KRTAP9-4Q9BYQ2 154 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 KRTAP9-3Q9BYQ3 159 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ABCG8Q9H221 673 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 BPIFA1Q9NP55 256 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 TRPV5Q9NQA5 729 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-220ENST00000525688 ADARB2Q9NS39 739 aaKnown RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 SEPT10Q9P0V9 454 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 HMG20BQ9P0W2 317 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 TSPYL4Q9UJ04 414 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 TUBE1Q9UJT0 475 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 NFE2L3Q9Y4A8 694 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 RAI2Q9Y5P3 530 aa4.72□□□□□ -1.65
CD44-220ENST00000525688 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.72□□□□□ -1.65
CD44-220ENST00000525688 RTL1A6NKG5 1358 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms