RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SLC11A1P49279 550 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 SEPHS1P49903 392 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 C2orf80Q0P641 193 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 CEACAM7Q14002 265 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 SMG9Q9H0W8 520 aaKnown RBP11.52□□□□□ -0.56
SYNPO-204ENST00000519664 TBCCD1Q9NVR7 557 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 PIPSLA2A3N6 862 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 SNTNA6NMZ2 147 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ISM1B1AKI9 464 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 TSC22D2O75157 780 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 GPIP06744 558 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ACADMP11310 421 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 G6PDP11413 515 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 CTSKP43235 329 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 MYBPC3Q14896 1274 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 GPAT3Q53EU6 434 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 KCTD8Q6ZWB6 473 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 PIK3C3Q8NEB9 887 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 RNFT2Q96EX2 444 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ZBED3Q96IU2 234 aaPredicted RBP11.52□□□□□ -0.57
SYNPO-204ENST00000519664 PTPN18Q99952 460 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 TDRD1Q9BXT4 1180 aaKnown RBP11.52□□□□□ -0.57
SYNPO-204ENST00000519664 NUDT4Q9NZJ9 180 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 EHD3Q9NZN3 535 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 PHF24Q9UPV7 400 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 CRYBG1Q9Y4K1 1723 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 SDHDO14521 159 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 IL6P05231 212 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 C8AP07357 584 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 MYL12AP19105 171 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 FUT4P22083 530 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ERVK-8P63133 956 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 SMARCB1Q12824 385 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 GRB7Q14451 532 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 CBX2Q14781 532 aaPredicted RBP11.52□□□□□ -0.57
SYNPO-204ENST00000519664 DSG4Q86SJ6 1040 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ENDOVQ8N8Q3 282 aaKnown RBP11.52□□□□□ -0.57
SYNPO-204ENST00000519664 UBASH3BQ8TF42 649 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 OLFM1Q99784 485 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 C1orf21Q9H246 121 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 C1orf109Q9NX04 203 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 SPACA6W5XKT8 324 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ZBTB42B2RXF5 422 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 MAFKO60675 156 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 TPST2O60704 377 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 CNMDO75829 334 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 SERPINA1P01009 418 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 RPS14P62263 151 aaKnown RBP11.52□□□□□ -0.57
SYNPO-204ENST00000519664 SULT2A1Q06520 285 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 CHST9Q7L1S5 443 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 SLCO6A1Q86UG4 719 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ARMC8Q8IUR7 673 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ACVR1CQ8NER5 493 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 CAPNS2Q96L46 248 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 NSMCE3Q96MG7 304 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 ENTPD4Q9Y227 616 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 PRELID1Q9Y255 219 aa11.52□□□□□ -0.57
SYNPO-204ENST00000519664 UPK3BL1B0FP48 263 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 UPK3BL2E5RIL1 263 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 BCKDKO14874 412 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 ALOX5P09917 674 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 PAICSP22234 425 aaKnown RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 GLDCP23378 1020 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 CD68P34810 354 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 STC1P52823 247 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 CDC42P60953 191 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 MERTKQ12866 999 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 CMPK2Q5EBM0 449 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 GPR153Q6NV75 609 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 GALNT18Q6P9A2 607 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 KRT73Q86Y46 540 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 KRT78Q8N1N4 520 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 OR4F6Q8NGB9 312 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 AURKBQ96GD4 344 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 TCF25Q9BQ70 676 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 VPS4AQ9UN37 437 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 SLC22A14Q9Y267 594 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 MTMR11A4FU01 709 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 CXCR6O00574 342 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 PRKD3O94806 890 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 GBAP04062 536 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 CLTBP09497 229 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 TSPAN19P0C672 248 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 GM2AP17900 193 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 AP1S1P61966 158 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 RHDQ02161 417 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 TLE2Q04725 743 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 RFX4Q33E94 735 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 PDZK1Q5T2W1 519 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 EGFLAMQ63HQ2 1017 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 TMEM220Q6QAJ8 160 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 ZDHHC21Q8IVQ6 265 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 C2CD4AQ8NCU7 369 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 C3orf58Q8NDZ4 430 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 WDR48Q8TAF3 677 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 SLC2A13Q96QE2 648 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 INTS10Q9NVR2 710 aaKnown RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 THG1LQ9NWX6 298 aaKnown RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 SCML2Q9UQR0 700 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 MRPS7Q9Y2R9 242 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms