RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 GRIP1Q9Y3R0 1128 aa3.88□□□□□ -1.79
HMGB1P28-201ENST00000507778 NME7Q9Y5B8 376 aa3.88□□□□□ -1.79
HMGB1P28-201ENST00000507778 PCDHGB1Q9Y5G3 927 aa3.88□□□□□ -1.79
HMGB1P28-201ENST00000507778 SETD1BQ9UPS6 1966 aaKnown RBP3.88□□□□□ -1.79
HMGB1P28-201ENST00000507778 A0A0G2JNG1 304 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 MED19A0JLT2 244 aaPredicted RBP3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 DENND3A2RUS2 1198 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 CTAGE9A4FU28 777 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 C5orf60A6NFR6 353 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 ACOT8O14734 319 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 TBCAO75347 108 aaKnown RBP3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 SLCO2B1O94956 709 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 HSPA4LO95757 839 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 LIPFP07098 398 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 OR2T7P0C7T2 308 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 DANCRP0C864 163 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 CTAGE8P0CG41 777 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 FGF3P11487 239 aaPredicted RBP3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 CSF2RAP15509 400 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 MCCP23508 829 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 MTHFRP42898 656 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 MMP15P51511 669 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 ZNF132P52740 706 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 KRTAP1-1Q07627 177 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 KIR2DS5Q14953 304 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 TNIP1Q15025 636 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 DUOXA1Q1HG43 343 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 ZNF585BQ52M93 769 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 KRBOX4Q5JUW0 171 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 KRT39Q6A163 491 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 ZNF324BQ6AW86 544 aaPredicted RBP3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 SPSB3Q6PJ21 355 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 PACS1Q6VY07 963 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 MEPCEQ7L2J0 689 aaKnown RBP3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 LONP2Q86WA8 852 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 CTAGE4Q8IX94 777 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 PI4KAP1Q8N8J0 262 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 SECTM1Q8WVN6 248 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 SEPHS2Q99611 448 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 LRRC1Q9BTT6 524 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 POLR3CQ9BUI4 534 aaPredicted RBP3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 ABHD6Q9BV23 337 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 EVA1AQ9H8M9 152 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 PFDN4Q9NQP4 134 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 TNFRSF18Q9Y5U5 241 aa3.87□□□□□ -1.79
HMGB1P28-201ENST00000507778 IGKV2D-30A0A075B6S6 120 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 A0A1W2PS18 150 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 PRAC2D3DTV9 90 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 MEIS2O14770 477 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SYNGR3O43761 229 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 PDE9AO76083 593 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 H1F0P07305 194 aaKnown RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SNRNP70P08621 437 aaKnown RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 CCKARP32238 428 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 RPL24P83731 157 aaKnown RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 EEF1A2Q05639 463 aaKnown RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 COASYQ13057 564 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 PRKAA1Q13131 559 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 ASIC2Q16515 512 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 VWC2Q2TAL6 325 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 STXBP5Q5T5C0 1151 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 GRTP1Q5TC63 336 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 LRCH2Q5VUJ6 765 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 ZNF517Q6ZMY9 492 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 ZBTB49Q6ZSB9 765 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 PIWIL4Q7Z3Z4 852 aaKnown RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 EXOC3L1Q86VI1 746 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 DCP1BQ8IZD4 617 aaKnown RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 MAML2Q8IZL2 1156 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 L3MBTL4Q8NA19 623 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 CAMKVQ8NCB2 501 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 PPFIBP2Q8ND30 876 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 Q8NFD4 153 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 OR5M8Q8NGP6 311 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 KIF18AQ8NI77 898 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SPDL1Q96EA4 605 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SPATA17Q96L03 361 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 FER1L6-AS2Q96M78 137 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SFXN2Q96NB2 322 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 RAB3IPQ96QF0 476 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SLX1AQ9BQ83 275 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 LMF2Q9BU23 707 aaKnown RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SLC25A23Q9BV35 468 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 ST6GALNAC4Q9H4F1 302 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 OSER1Q9NX31 292 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 ANAPC5Q9UJX4 755 aa3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 SPIN1Q9Y657 262 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P28-201ENST00000507778 TEX13DA0A0J9YY54 714 aaPredicted RBP3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 A0A1W2PPM1 405 aa3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 A0A1W2PRQ8 180 aa3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 RECQL5O94762 991 aaPredicted RBP3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 CELF2O95319 508 aaKnown RBP3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 C22orf31O95567 290 aa3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 SCG2P13521 617 aa3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 FDPSP14324 419 aaKnown RBP3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 CKMT2P17540 419 aa3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 ACHEP22303 614 aa3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 EEF1B2P24534 225 aaKnown RBP3.85□□□□□ -1.79
HMGB1P28-201ENST00000507778 PTAFRP25105 342 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms