RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 MR1Q95460 341 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 ULK4Q96C45 1275 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 ZNF501Q96CX3 271 aaPredicted RBP11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 SPATA13Q96N96 652 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 TBL1YQ9BQ87 522 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 TUBB2BQ9BVA1 445 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 GPR87Q9BY21 358 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 TRIM55Q9BYV6 548 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 TRIM5Q9C035 493 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 FAM96AQ9H5X1 160 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 LUC7LQ9NQ29 371 aaKnown RBP11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 ANKMY1Q9P2S6 941 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 EFR3BQ9Y2G0 817 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 PCDHA3Q9Y5H8 950 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 COLEC10Q9Y6Z7 277 aa11.24□□□□□ -0.61
HMGCS1-204ENST00000507293 SPTBP11277 2137 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 SOWAHDA6NJG2 315 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 CFAP99D6REC4 459 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 PYGMP11217 842 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 ATP1B2P14415 290 aaPredicted RBP11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 CDH3P22223 829 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 PTPN7P35236 360 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 RPS15P62841 145 aaKnown RBP11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 SRSF1Q07955 248 aaKnown RBP eCLIP11.23□□□□□ -0.613e-7■■■■□ 22.3
HMGCS1-204ENST00000507293 CHAF1BQ13112 559 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 PRKAA1Q13131 559 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 IL10RAQ13651 578 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 LAMB3Q13751 1172 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 UBAP2LQ14157 1087 aaKnown RBP11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 PRAMEF17Q5VTA0 474 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 CPZQ66K79 652 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 DENND5AQ6IQ26 1287 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 SNX20Q7Z614 316 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 SYVN1Q86TM6 617 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 CARFQ8N187 725 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 ACVR1CQ8NER5 493 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 OR4E2Q8NGC2 313 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 OR8K5Q8NH50 307 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 SEC14L1Q92503 715 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 MIB2Q96AX9 1013 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 FERD3LQ96RJ6 166 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 COPS8Q99627 209 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 CCM2Q9BSQ5 444 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 TLR10Q9BXR5 811 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 COG4Q9H9E3 785 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 LATS2Q9NRM7 1088 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 KCND1Q9NSA2 647 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 POMT2Q9UKY4 750 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 BTRCQ9Y297 605 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 HEBP2Q9Y5Z4 205 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 MED13Q9UHV7 2174 aa11.23□□□□□ -0.61
HMGCS1-204ENST00000507293 FER1L5A0AVI2 2057 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 CCDC66A2RUB6 948 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 GSAPA4D1B5 854 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 SLC9B1P1A6NJY1 282 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 LDB2O43679 373 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 MC4RP32245 332 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 HADHAP40939 763 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 CDKN1CP49918 316 aaPredicted RBP11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 MLLT10P55197 1068 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 NAP1L1P55209 391 aaKnown RBP11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 RWDD2BP57060 319 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 ABRQ12979 859 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 SLC38A9Q8NBW4 561 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 HEXDCQ8WVB3 486 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 LCN9Q8WX39 176 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 THAP4Q8WY91 577 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 ALG3Q92685 438 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 DNAJC1Q96KC8 554 aaKnown RBP11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 PPP1R2P1Q96PQ5 205 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 NRTNQ99748 197 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 CHST8Q9H2A9 424 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 SRMSQ9H3Y6 488 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 FANCEQ9HB96 536 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 C1GALT1Q9NS00 363 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 ZDHHC3Q9NYG2 299 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 FEZ2Q9UHY8 353 aaPredicted RBP11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 FARSAQ9Y285 508 aaKnown RBP11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 DUSP10Q9Y6W6 482 aa11.22□□□□□ -0.61
HMGCS1-204ENST00000507293 NBASA2RRP1 2371 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 IGLV3-16A0A075B6K0 115 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 C17orf113A0A1B0GUU1 675 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 CLEC18AA5D8T8 446 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ARGFXA6NJG6 315 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 TMEM150CB9EJG8 249 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 MATN2O00339 956 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 IFRD1O00458 451 aaPredicted RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 BTN3A3O00478 584 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 BTN3A1O00481 513 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 TJP3O95049 919 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 KLK3P07288 261 aaPredicted RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 PRSS56P0CW18 603 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ACRV1P26436 265 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 CETN2P41208 172 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 LMAN1P49257 510 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 GSDMDP57764 484 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 GPR33Q49SQ1 333 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ZNF658BQ4V348 819 aaPredicted RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ZRANB3Q5FWF4 1079 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 PLEKHS1Q5SXH7 462 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms