RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PCDHB14Q9Y5E9 798 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 MIA3Q5JRA6 1907 aa9.53□□□□□ -0.88
SYNE1-230ENST00000495090 NYNRINQ9P2P1 1898 aaKnown RBP9.53□□□□□ -0.88
SYNE1-230ENST00000495090 FAM220BPB1ANY3 271 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CD3EAPO15446 510 aaKnown RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 IRAK2O43187 625 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 TBX1O43435 398 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CA12O43570 354 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 MAN1A2O60476 641 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 ECI2O75521 394 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CCNKO75909 580 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 GOT2P00505 430 aaKnown RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 FTH1P02794 183 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 HOXD8P13378 290 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CXCR2P25025 360 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 PPP3CCP48454 512 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 COPZ1P61923 177 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 RAD51Q06609 339 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 SOX4Q06945 474 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CYP4F3Q08477 520 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 MARCH8Q5T0T0 291 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 RSBN1Q5VWQ0 802 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 WSCD1Q658N2 575 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CES5AQ6NT32 575 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CYP20A1Q6UW02 462 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 Q6ZSR9 355 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 TMEM179BQ7Z7N9 219 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 DPP9Q86TI2 863 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 LDB1Q86U70 411 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 TSPYL5Q86VY4 417 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 APOBEC3FQ8IUX4 373 aaKnown RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 MICU2Q8IYU8 434 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 TMEM86AQ8N2M4 240 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 NAT16Q8N8M0 369 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 SIMC1Q8NDZ2 872 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 IL17RDQ8NFM7 739 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 OR6F1Q8NGZ6 308 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 EDEM1Q92611 657 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 FAM162AQ96A26 154 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 FUBP1Q96AE4 644 aaKnown RBP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 SMARCD1Q96GM5 515 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 CSNK1G1Q9HCP0 422 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.52□□□□□ -0.88
SYNE1-230ENST00000495090 VAPAQ9P0L0 249 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF221Q9UK13 617 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 MKLN1Q9UL63 735 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 KCNH4Q9UQ05 1017 aa9.52□□□□□ -0.88
SYNE1-230ENST00000495090 BRCA1P38398 1863 aaKnown RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 BPTFQ12830 3046 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 PNMA8CA0A1B0GUJ8 204 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 LOC285095A0A1B0GVY8 99 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 HOXC11O43248 304 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 PEX10O60683 326 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 GUCY1B2O75343 617 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 RPP40O75818 363 aaKnown RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 APOA1P02647 267 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 MMP2P08253 660 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 FSHRP23945 695 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 PRDX3P30048 256 aaKnown RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 FMO3P31513 532 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 LHX1P48742 406 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 STC1P52823 247 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 NKX2-5P52952 324 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 DMPKQ09013 629 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 LAPTM5Q13571 262 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 DGCR6Q14129 220 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 PON2Q15165 354 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 GRIK4Q16099 956 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 PROX2Q3B8N5 592 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 COLEC12Q5KU26 742 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 CPZQ66K79 652 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 ATG9BQ674R7 924 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 KDM4DQ6B0I6 523 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 CCBE1Q6UXH8 406 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 RNF165Q6ZSG1 346 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 DET1Q7L5Y6 550 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 KDELC2Q7Z4H8 507 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 PLPP6Q8IY26 295 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 METTL4Q8N3J2 472 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 NKAPQ8N5F7 415 aaKnown RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 Q8N9G6 341 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 ASCC1Q8N9N2 400 aaKnown RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 GLB1L3Q8NCI6 653 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 ZNF540Q8NDQ6 660 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 SLC13A3Q8WWT9 602 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 C16orf70Q9BSU1 422 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 TAS2R13Q9NYV9 303 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 RAPGEFL1Q9UHV5 662 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 NUDT5Q9UKK9 219 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 NDRG4Q9ULP0 352 aaKnown RBP9.52□□□□□ -0.89
SYNE1-230ENST00000495090 GRIP1Q9Y3R0 1128 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 PKP3Q9Y446 797 aa9.52□□□□□ -0.89
SYNE1-230ENST00000495090 MCM3APO60318 1980 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 NOTOA8MTQ0 251 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 E9PQ18 207 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 E2F3O00716 465 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 DFNA5O60443 496 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 GPR32O75388 356 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 SEC22BO75396 215 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CNMDO75829 334 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms