RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CLCNKAP51800 687 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 PDX1P52945 283 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 INHBCP55103 352 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 ACTR1AP61163 376 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 ZFP36L1Q07352 338 aaKnown RBP16.74■□□□□ 0.27
VIM-205ENST00000485947 BIRC2Q13490 618 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 GRTP1Q5TC63 336 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 MRNIPQ6NTE8 343 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 NEPROQ6NW34 567 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 PACS1Q6VY07 963 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 CLEC14AQ86T13 490 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 OR6P1Q8NGX9 317 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 MTBPQ96DY7 904 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 AGAP2Q99490 1192 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 CENPHQ9H3R5 247 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 IL1RAPL1Q9NZN1 696 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 TMEM98Q9Y2Y6 226 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 PCDHGA7Q9Y5G6 932 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 A0A0U1RQS6 177 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 CDRT15L2A8MXV6 281 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 PLD2O14939 933 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 NUAK1O60285 661 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 ASMTLO95671 621 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 CPNE6O95741 557 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 SPRP35270 261 aaPredicted RBP16.73■□□□□ 0.27
VIM-205ENST00000485947 SPAM1P38567 509 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 TMPRSS15P98073 1019 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 B4GALNT1Q00973 533 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 TMED2Q15363 201 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 TCEA2Q15560 299 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 TTMPQ5BVD1 217 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 C3orf38Q5JPI3 329 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 DOK6Q6PKX4 331 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 SLC30A9Q6PML9 568 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 NAGSQ8N159 534 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 C2CD4AQ8NCU7 369 aaPredicted RBP16.73■□□□□ 0.27
VIM-205ENST00000485947 OR4L1Q8NH43 312 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 ARL8AQ96BM9 186 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 TLCD1Q96CP7 247 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 EID2BQ96D98 161 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 MRRFQ96E11 262 aaKnown RBP16.73■□□□□ 0.27
VIM-205ENST00000485947 PRR11Q96HE9 360 aaPredicted RBP16.73■□□□□ 0.27
VIM-205ENST00000485947 DCBLD2Q96PD2 775 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 TRIM39Q9HCM9 518 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 CATSPERZQ9NTU4 200 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 SENP1Q9P0U3 644 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 CTNNAL1Q9UBT7 734 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 FKBPLQ9UIM3 349 aa16.73■□□□□ 0.27
VIM-205ENST00000485947 CCDC162PA2VCL2 907 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 OR5K4A6NMS3 321 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 PFDN6O15212 129 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 INPP4BO15327 924 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 VEGFDO43915 354 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 PIAS1O75925 651 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 SNRPAP09012 282 aaKnown RBP16.72■□□□□ 0.27
VIM-205ENST00000485947 AK4P27144 223 aaPredicted RBP16.72■□□□□ 0.27
VIM-205ENST00000485947 MC4RP32245 332 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 SLC1A2P43004 574 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 GPLD1P80108 840 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 TRA2AQ13595 282 aaKnown RBP eCLIP16.72■□□□□ 0.27
VIM-205ENST00000485947 PTPRCAPQ14761 206 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 FASTKD1Q53R41 847 aaKnown RBP16.72■□□□□ 0.27
VIM-205ENST00000485947 BROXQ5VW32 411 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 ZNF470Q6ECI4 717 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 RAB11FIP2Q7L804 512 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 STRA8Q7Z7C7 330 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 SDCCAG8Q86SQ7 713 aaPredicted RBP16.72■□□□□ 0.27
VIM-205ENST00000485947 PIM3Q86V86 326 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.72■□□□□ 0.27
VIM-205ENST00000485947 SH3KBP1Q96B97 665 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 VPS35Q96QK1 796 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 RBBP8Q99708 897 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 CMKLR1Q99788 373 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 SPATA16Q9BXB7 569 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 STN1Q9H668 368 aaKnown RBP16.72■□□□□ 0.27
VIM-205ENST00000485947 SYNDIG1Q9H7V2 258 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 AKAP7Q9P0M2 348 aaPredicted RBP16.72■□□□□ 0.27
VIM-205ENST00000485947 TBK1Q9UHD2 729 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 ZNHIT2Q9UHR6 403 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 FBXO5Q9UKT4 447 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 ACSL6Q9UKU0 697 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 ST14Q9Y5Y6 855 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 ACTL7BQ9Y614 415 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 SLC30A1Q9Y6M5 507 aa16.72■□□□□ 0.27
VIM-205ENST00000485947 FADS2P1A8MWK0 482 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 H3BQF6 201 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 HGSO14964 777 aaPredicted RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 CD3EAPO15446 510 aaKnown RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 UGT1A9O60656 530 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 SLC25A14O95258 325 aaPredicted RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 BPIP17213 487 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 KRT15P19012 456 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 FOXN2P32314 431 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 LIMK2P53671 638 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 XIAPP98170 497 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 CACNG1Q06432 222 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 TYSND1Q2T9J0 566 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 AARS2Q5JTZ9 985 aaKnown RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 CILP2Q8IUL8 1156 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 PHYKPLQ8IUZ5 450 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms