RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 KLHL40Q2TBA0 621 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 ZNF628Q5EBL2 1059 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 CAVIN1Q6NZI2 390 aaKnown RBP5.62□□□□□ -1.51
USP40-213ENST00000483216 SLC26A9Q7LBE3 791 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 SCYL3Q8IZE3 742 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 GBGT1Q8N5D6 347 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 NR4A3Q92570 626 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 ST6GAL2Q96JF0 529 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 PGLYRP2Q96PD5 576 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 DNAJB4Q9UDY4 337 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 GPRASP1Q5JY77 1395 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 NPC1L1Q9UHC9 1359 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 YEATS2Q9ULM3 1422 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 FANCAO15360 1455 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 ATP7AQ04656 1500 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 A6NCN8 305 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 AGAP14A8MT82 685 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 E9PCH4 1651 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 TMEM189-UBE2V1I3L0A0 370 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 TET3O43151 1660 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 GRID2O43424 1007 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 PRKNO60260 465 aaPredicted RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 SLC22A3O75751 556 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 TRPM2O94759 1503 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 NR1D1P20393 614 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 MCCP23508 829 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 NKTRP30414 1462 aaKnown RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 HOXD13P35453 343 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 TIMP3P35625 211 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 CLNS1AP54105 237 aaKnown RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 PRDM15P57071 1507 aaPredicted RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 UBE2V1Q13404 147 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 DUSP28Q4G0W2 176 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 CCDC184Q52MB2 194 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 RAB41Q5JT25 222 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 PLEKHS1Q5SXH7 462 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 PIWIL4Q7Z3Z4 852 aaKnown RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 GALNT5Q7Z7M9 940 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 KLHDC9Q8NEP7 349 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 LRRC59Q96AG4 307 aaKnown RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 FAM120BQ96EK7 910 aaKnown RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 GREB1LQ9C091 1923 aaPredicted RBP5.61□□□□□ -1.51
USP40-213ENST00000483216 GHITMQ9H3K2 345 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 KNSTRNQ9Y448 316 aa5.61□□□□□ -1.51
USP40-213ENST00000483216 SPHKAPQ2M3C7 1700 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 RNF17Q9BXT8 1623 aaKnown RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 VWDEQ8N2E2 1590 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 CFAP74Q9C0B2 1584 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 ADGRL1O94910 1474 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 KANK1Q14678 1352 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 A0A1W2PPI3 338 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 FAM72CH0Y354 149 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 MITFO75030 526 aaPredicted RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 TFAP2AP05549 437 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 HSP90AB1P08238 724 aaKnown RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 CD81P60033 236 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 MC1RQ01726 317 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 CREB5Q02930 508 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 DMP1Q13316 513 aaPredicted RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 KCNC3Q14003 757 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 KIR2DS3Q14952 304 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 SYCP1Q15431 976 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 FAM72AQ5TYM5 149 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 GFI1BQ5VTD9 330 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 FAM205BPQ63HN1 556 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 FAM72DQ6L9T8 149 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 CASC1Q6TDU7 716 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 PACS1Q6VY07 963 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 FAM72BQ86X60 149 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 GALNT13Q8IUC8 556 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 OXNAD1Q96HP4 312 aaPredicted RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 NEUROD6Q96NK8 337 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 SLC22A12Q96S37 553 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 DDOQ99489 341 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 BARD1Q99728 777 aaKnown RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 TRPC7Q9HCX4 862 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 MAP3K20Q9NYL2 800 aaKnown RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 SUCLA2Q9P2R7 463 aaPredicted RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 SEC63Q9UGP8 760 aaKnown RBP5.6□□□□□ -1.51
USP40-213ENST00000483216 TCF19Q9Y242 345 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 CEP152O94986 1710 aa5.6□□□□□ -1.51
USP40-213ENST00000483216 PTPRTO14522 1441 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 ANKRD18BA2A2Z9 1011 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 H0YIN7 160 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 BMP10O95393 424 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 GABPB1Q06547 395 aaPredicted RBP5.59□□□□□ -1.51
USP40-213ENST00000483216 CTR9Q6PD62 1173 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 LONP2Q86WA8 852 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 AFAP1Q8N556 730 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 SMPDL3BQ92485 455 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 SAT2Q96F10 170 aaPredicted RBP5.59□□□□□ -1.51
USP40-213ENST00000483216 C17orf77Q96MU5 243 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 SEMA6AQ9H2E6 1030 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 HRH4Q9H3N8 390 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 DNAJC18Q9H819 358 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 HAUS2Q9NVX0 235 aa5.59□□□□□ -1.51
USP40-213ENST00000483216 ZNF215Q9UL58 517 aaPredicted RBP5.59□□□□□ -1.51
USP40-213ENST00000483216 CLTCL1P53675 1640 aa5.59□□□□□ -1.52
USP40-213ENST00000483216 MADDQ8WXG6 1647 aa5.59□□□□□ -1.52
USP40-213ENST00000483216 NEURL4Q96JN8 1562 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms