RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TMEM26Q6ZUK4 368 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 ERMP1Q7Z2K6 904 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 SPRED1Q7Z699 444 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 RAB44Q7Z6P3 723 aaPredicted RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 SLC26A11Q86WA9 606 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 ZNF761Q86XN6 746 aaPredicted RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 RBM12BQ8IXT5 1001 aaKnown RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 CHCHD4Q8N4Q1 142 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 WDR48Q8TAF3 677 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 CDKL2Q92772 493 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 KCNJ9Q92806 393 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 AARSD1Q9BTE6 412 aaKnown RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 UCK1Q9HA47 277 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 SLC40A1Q9NP59 571 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 LATS2Q9NRM7 1088 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 IMP3Q9NV31 184 aaKnown RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 NSMCE4AQ9NXX6 385 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 SLC17A6Q9P2U8 582 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 CDYLQ9Y232 598 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 COMMD10Q9Y6G5 202 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 DMXL1Q9Y485 3027 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 NTN3O00634 580 aaPredicted RBP11.67□□□□□ -0.54
VPS13D-204ENST00000469054 CASC3O15234 703 aaKnown RBP11.67□□□□□ -0.54
VPS13D-204ENST00000469054 SPAG6O75602 509 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 SLCO2B1O94956 709 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 C1QAP02745 245 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 RPLP0P05388 317 aaKnown RBP11.67□□□□□ -0.54
VPS13D-204ENST00000469054 ADRB1P08588 477 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 ACADLP28330 430 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 NDUFS1P28331 727 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 STX2P32856 288 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 CSE1LP55060 971 aaKnown RBP11.67□□□□□ -0.54
VPS13D-204ENST00000469054 FOXC1Q12948 553 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 TMED2Q15363 201 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 KYNUQ16719 465 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 PLEKHS1Q5SXH7 462 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 TMPRSS7Q7RTY8 843 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 STRA8Q7Z7C7 330 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 PDZD3Q86UT5 571 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 TMPRSS12Q86WS5 348 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 VRK3Q8IV63 474 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 SLC22A15Q8IZD6 547 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 EIF1ADQ8N9N8 165 aaKnown RBP11.67□□□□□ -0.54
VPS13D-204ENST00000469054 ZFPM2Q8WW38 1151 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 TFGQ92734 400 aaPredicted RBP11.67□□□□□ -0.54
VPS13D-204ENST00000469054 FAM136AQ96C01 138 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 NDNQ99608 321 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 SMYD2Q9NRG4 433 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 KCNK4Q9NYG8 393 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 KLHL42Q9P2K6 505 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 GALPQ9UBC7 116 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 MED16Q9Y2X0 877 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 HEBP2Q9Y5Z4 205 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 COLEC10Q9Y6Z7 277 aa11.67□□□□□ -0.54
VPS13D-204ENST00000469054 DCHS1Q96JQ0 3298 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 GOLGA4Q13439 2230 aaKnown RBP11.66□□□□□ -0.54
VPS13D-204ENST00000469054 IGHV1OR21-1A0A087WYE8 117 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 LILRA5A6NI73 299 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 FAM159BA6NKW6 160 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CXorf49A8MYA2 514 aaPredicted RBP11.66□□□□□ -0.54
VPS13D-204ENST00000469054 TCEA3O75764 348 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 PIAS1O75925 651 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 MT-CO3P00414 261 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CD1CP29017 333 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 ABCG1P45844 678 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CLCN7P51798 805 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 EPHA4P54764 986 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 GPLD1P80108 840 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 SQSTM1Q13501 440 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 SPIDRQ14159 915 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 GPR18Q14330 331 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 KRT33BQ14525 404 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 SLMAPQ14BN4 828 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 KBTBD12Q3ZCT8 623 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 AMZ1Q400G9 498 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 HES3Q5TGS1 186 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CDCP2Q5VXM1 449 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 UGT3A1Q6NUS8 523 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 DUS1LQ6P1R4 473 aaKnown RBP11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CACTIN-AS1Q8N1I8 211 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 GALNT15Q8N3T1 639 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 ZBTB2Q8N680 514 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 EFCAB3Q8N7B9 438 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 OR10G6Q8NH81 332 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 FBF1Q8TES7 1133 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 FERD3LQ96RJ6 166 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 TBC1D10AQ9BXI6 508 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CDC42EP4Q9H3Q1 356 aaKnown RBP11.66□□□□□ -0.54
VPS13D-204ENST00000469054 MVB12BQ9H7P6 319 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 SYNDIG1Q9H7V2 258 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 NINJ2Q9NZG7 142 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CORO1CQ9ULV4 474 aaPredicted RBP11.66□□□□□ -0.54
VPS13D-204ENST00000469054 CLCA2Q9UQC9 943 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 ASF1AQ9Y294 204 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 VWA7Q9Y334 891 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 DHRS7Q9Y394 339 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 PSAT1Q9Y617 370 aa11.66□□□□□ -0.54
VPS13D-204ENST00000469054 ARHGEF17Q96PE2 2063 aaPredicted RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 HYAL3O43820 417 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms