RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DOK6Q6PKX4 331 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 ZNF438Q7Z4V0 828 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 SFTPA2Q8IWL1 248 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 RCBTB1Q8NDN9 531 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 MNS1Q8NEH6 495 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 OR13J1Q8NGT2 312 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 ZNF398Q8TD17 642 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 PTCD2Q8WV60 388 aaKnown RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 KIAA1143Q96AT1 154 aaPredicted RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 SNF8Q96H20 258 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 CDKN2AIPNLQ96HQ2 116 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 OR2M4Q96R27 311 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 DDA1Q9BW61 102 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 TRIM31Q9BZY9 425 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 SUDS3Q9H7L9 328 aaPredicted RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 MRM3Q9HC36 420 aaKnown RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 SYBUQ9NX95 663 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 PILRAQ9UKJ1 303 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 TMPRSS11EQ9UL52 423 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 TMEM98Q9Y2Y6 226 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 ST14Q9Y5Y6 855 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 KCNMB2Q9Y691 235 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 OAS3Q9Y6K5 1087 aaKnown RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 PIKFYVEQ9Y2I7 2098 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 LOC101059948A0A1B0GTJ6 334 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 RHPN2P1A8MT19 583 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 AGAP14A8MT82 685 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 GPR89AB7ZAQ6 455 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 NDC80O14777 642 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 B4GAT1O43505 415 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 UGT1A9O60656 530 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 AVILO75366 819 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ASMTLO95671 621 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 GPR89BP0CG08 455 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 UGT1A6P19224 532 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ITGALP20701 1170 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 UGT1A1P22309 533 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 UGT1A4P22310 534 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 MAP4P27816 1152 aaKnown RBP11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 MC4RP32245 332 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ACTR1BP42025 376 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 MAGEA3P43357 314 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ACTR1AP61163 376 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 MRPS25P82663 173 aaKnown RBP11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 NFATC2Q13469 925 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 EIF2S3LQ2VIR3 472 aaKnown RBP11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 LDLRAP1Q5SW96 308 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 HIBCHQ6NVY1 386 aaPredicted RBP11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 C16orf46Q6P387 395 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 SLC30A9Q6PML9 568 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 SNX20Q7Z614 316 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 GALNT13Q8IUC8 556 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 SLC34A3Q8N130 599 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 NAGSQ8N159 534 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 BBOF1Q8ND07 529 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 DDHD1Q8NEL9 900 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ART4Q93070 314 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ZNF778Q96MU6 729 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ERP44Q9BS26 406 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 KIFC1Q9BW19 673 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 RAB17Q9H0T7 212 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ASB8Q9H765 288 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 RMI1Q9H9A7 625 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 UGT1A7Q9HAW7 530 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 UGT1A10Q9HAW8 530 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 UGT1A8Q9HAW9 530 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 TRIM39Q9HCM9 518 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ARFGAP3Q9NP61 516 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 CHRAC1Q9NRG0 131 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 TREX1Q9NSU2 369 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 ATXN10Q9UBB4 475 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 SLC2A6Q9UGQ3 507 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 SOX13Q9UN79 622 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 SLC30A1Q9Y6M5 507 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 MED13LQ71F56 2210 aa11.68□□□□□ -0.54
SQSTM1-206ENST00000466342 IGHV5-10-1A0A0J9YXX1 117 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 CTAGE15A4D2H0 777 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 SDR42E2A6NKP2 422 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 VEGFDO43915 354 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 NUAK1O60285 661 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 ZNF500O60304 480 aaPredicted RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 DNAJC6O75061 913 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 MTX2O75431 263 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 CTAGE8P0CG41 777 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 TCN2P20062 427 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 NMBRP28336 390 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 ALDH4A1P30038 563 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 CA5AP35218 305 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 RPL21P46778 160 aaKnown RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 ITGA8P53708 1063 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 MAZP56270 477 aaKnown RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 BIRC2Q13490 618 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 SQSTM1Q13501 440 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 TRA2AQ13595 282 aaKnown RBP eCLIP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 GPR33Q49SQ1 333 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 KHDC1Q4VXA5 237 aaKnown RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 ZNF648Q5T619 568 aaPredicted RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 DCAF12Q5T6F0 453 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 GPRC6AQ5T6X5 926 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 C8orf74Q6P047 294 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms