RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PTRHD1Q6GMV3 140 aaKnown RBP18.23■□□□□ 0.51
USP39-209ENST00000458268 KLHL35Q6PF15 583 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 PACS1Q6VY07 963 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 CERS6Q6ZMG9 384 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 OR4E2Q8NGC2 313 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 ZDHHC12Q96GR4 267 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 ELMO2Q96JJ3 720 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 C9orf72Q96LT7 481 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 FCRL3Q96P31 734 aaPredicted RBP18.23■□□□□ 0.51
USP39-209ENST00000458268 TAAR9Q96RI9 348 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 CPNE5Q9HCH3 593 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 TREX1Q9NSU2 369 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 SLC24A2Q9UI40 661 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 SOX13Q9UN79 622 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 PCDHGA7Q9Y5G6 932 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 HEBP2Q9Y5Z4 205 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 F8W8V4 182 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 F7P08709 466 aaPredicted RBP18.22■□□□□ 0.51
USP39-209ENST00000458268 PAFAH1B1P43034 410 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 TTPAP49638 278 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 ARL4DP49703 201 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 DNTTIP2Q5QJE6 756 aaKnown RBP18.22■□□□□ 0.51
USP39-209ENST00000458268 CAPRIN2Q6IMN6 1127 aaKnown RBP18.22■□□□□ 0.51
USP39-209ENST00000458268 ARHGAP22Q7Z5H3 698 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 PDZD3Q86UT5 571 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 CAND1Q86VP6 1230 aaKnown RBP18.22■□□□□ 0.51
USP39-209ENST00000458268 OOSP2Q86WS3 158 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 PPIL6Q8IXY8 311 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 CFAP61Q8NHU2 1237 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 LKAAEAR1Q8TD35 194 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 LCN9Q8WX39 176 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 PEX13Q92968 403 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 SERPINB12Q96P63 405 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 NRTNQ99748 197 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 KIFC1Q9BW19 673 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 TSSK1BQ9BXA7 367 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 OR52A5Q9H2C5 316 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 XAB2Q9HCS7 855 aaKnown RBP18.22■□□□□ 0.51
USP39-209ENST00000458268 APMAPQ9HDC9 416 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 HRASLS2Q9NWW9 162 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 TDRKHQ9Y2W6 561 aaKnown RBP18.22■□□□□ 0.51
USP39-209ENST00000458268 B3GALT1Q9Y5Z6 326 aa18.22■□□□□ 0.51
USP39-209ENST00000458268 SDK2Q58EX2 2172 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 GSAPA4D1B5 854 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 LIN7AO14910 233 aaPredicted RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 NVLO15381 856 aaKnown RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 PAMP19021 973 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 POLR2CP19387 275 aaPredicted RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 NDUFS1P28331 727 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 HSPA14Q0VDF9 509 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 CLN3Q13286 438 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 DHX34Q14147 1143 aaKnown RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 DCAF12Q5T6F0 453 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 ARHGAP40Q5TG30 622 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 IZUMO3Q5VZ72 239 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 PAPD7Q5XG87 772 aaKnown RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 SDCCAG8Q86SQ7 713 aaPredicted RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 VASH2Q86V25 355 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 TFGQ92734 400 aaPredicted RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 FAM136AQ96C01 138 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 TRIM51Q9BSJ1 452 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 TRIM31Q9BZY9 425 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 XKR8Q9H6D3 395 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 KIR3DX1Q9H7L2 352 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 MRM3Q9HC36 420 aaKnown RBP18.21■□□□□ 0.51
USP39-209ENST00000458268 ASF1AQ9Y294 204 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 NEU2Q9Y3R4 380 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 PCDHB11Q9Y5F2 797 aa18.21■□□□□ 0.51
USP39-209ENST00000458268 ZZEF1O43149 2961 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 DSPP15924 2871 aaKnown RBP18.2■□□□□ 0.5
USP39-209ENST00000458268 SDR42E2A6NKP2 422 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 PRMT5O14744 637 aaPredicted RBP18.2■□□□□ 0.5
USP39-209ENST00000458268 C9P02748 559 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 FMO4P31512 558 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 MAGEA6P43360 314 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 TMPRSS3P57727 454 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 SH3BP2P78314 561 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 DR1Q01658 176 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 PRKAA1Q13131 559 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 PTK6Q13882 451 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 TMED2Q15363 201 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 MRNIPQ6NTE8 343 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 FBXO38Q6PIJ6 1188 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 CREG2Q8IUH2 290 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 OR5AR1Q8NGP9 310 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 SKA2Q8WVK7 121 aaPredicted RBP18.2■□□□□ 0.5
USP39-209ENST00000458268 MAP3K3Q99759 626 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 DPH1Q9BZG8 443 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 SRMSQ9H3Y6 488 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 PDP2Q9P2J9 529 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 CIDEBQ9UHD4 219 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 GNPTGQ9UJJ9 305 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 PLAGL1Q9UM63 463 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 RPS6KL1Q9Y6S9 549 aa18.2■□□□□ 0.5
USP39-209ENST00000458268 CELSR3Q9NYQ7 3312 aa18.19■□□□□ 0.5
USP39-209ENST00000458268 OR5K3A6NET4 321 aa18.19■□□□□ 0.5
USP39-209ENST00000458268 DNALI1O14645 258 aaPredicted RBP18.19■□□□□ 0.5
USP39-209ENST00000458268 BANF1O75531 89 aa18.19■□□□□ 0.5
USP39-209ENST00000458268 GSTM1P09488 218 aa18.19■□□□□ 0.5
USP39-209ENST00000458268 LIPCP11150 499 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms