RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ACSL4O60488 711 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 RECQL5O94762 991 aaPredicted RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 SEC24AO95486 1093 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 ENO2P09104 434 aaPredicted RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 DBTP11182 482 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 MTHFD2P13995 350 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 AGXTP21549 392 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 IGFBP5P24593 272 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 POU1F1P28069 291 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 CORO1AP31146 461 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 SHMT2P34897 504 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 RGRP47804 291 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 IDH2P48735 452 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 ST13P50502 369 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 HLCSP50747 726 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 FOXM1Q08050 763 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 PLD1Q13393 1074 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 ABRAXAS2Q15018 415 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 TAF1AQ15573 450 aaPredicted RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 SPRYD7Q5W111 196 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 GALNT10Q86SR1 603 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 CNIH3Q8TBE1 160 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 UROC1Q96N76 676 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 ARNT2Q9HBZ2 717 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 ZIM2Q9NZV7 527 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 DNAJB9Q9UBS3 223 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 PCTPQ9UKL6 214 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 SAMHD1Q9Y3Z3 626 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 FXYD1O00168 92 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 PRRG1O14668 218 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 TULP3O75386 442 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 PRAMEF1O95521 474 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 CASP9P55211 416 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 PWP1Q13610 501 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 DGUOKQ16854 277 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 UGT3A2Q3SY77 523 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 CYBRD1Q53TN4 286 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 BHLHA9Q7RTU4 235 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 SZRD1Q7Z422 152 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 SERPINA9Q86WD7 417 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 FRS2Q8WU20 508 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 SGCDQ92629 289 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 HTRA1Q92743 480 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 TAMM41Q96BW9 452 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 RBM4BQ9BQ04 359 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 RBM4Q9BWF3 364 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 ATAD3AQ9NVI7 634 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 TBL1XO60907 577 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 NDUFS2O75306 463 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 XPAP23025 273 aaPredicted RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 ITPKAP23677 461 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 DGKAP23743 735 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 POLR2IP36954 125 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 PPP3CCP48454 512 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 LRRC74AQ0VAA2 488 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 MAD2L1Q13257 205 aaPredicted RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 KCNA10Q16322 511 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 PRSS55Q6UWB4 352 aaPredicted RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 SYTL1Q8IYJ3 562 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 OR2T11Q8NH01 316 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 C1orf74Q96LT6 269 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 MYOCQ99972 504 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 EBPLQ9BY08 206 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 SH3BP4Q9P0V3 963 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 GMEB1Q9Y692 573 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 CLDN25C9JDP6 229 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 EEDO75530 441 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 INAQ16352 499 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 MOGQ16653 247 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 LDLRAD1Q5T700 205 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 ANKRD34AQ69YU3 496 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 TPGS1Q6ZTW0 290 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 SLC44A2Q8IWA5 706 aaPredicted RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 REXO5Q96IC2 774 aaKnown RBP11.68□□□□□ -0.54
MSH6-204ENST00000445503 C8orf4Q9NR00 106 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 TRIM17Q9Y577 477 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 PCDHA9Q9Y5H5 950 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 ABCB7O75027 752 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 MATN4O95460 622 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 GKP32189 559 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 DNASE1L3Q13609 305 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 RCAN2Q14206 197 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 MBOAT1Q6ZNC8 495 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 AHSA2Q719I0 299 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 STK40Q8N2I9 435 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 PANX1Q96RD7 426 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 FARSBQ9NSD9 589 aaKnown RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 FAIMQ9NVQ4 179 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 PDP1Q9P0J1 537 aaPredicted RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 MROH6A6NGR9 719 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 ANKRD66B4E2M5 251 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 DUSP11O75319 330 aaKnown RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 CLPXO76031 633 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 MYO1DO94832 1006 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 COL6A1P12109 1028 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 ZNF12P17014 697 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 TYMPP19971 482 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 MAP2K4P45985 399 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 MAPKAPK2P49137 400 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 KPNA1P52294 538 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms