RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NEPROQ6NW34 567 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 FAM151BQ6UXP7 276 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 LIPIQ6XZB0 460 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 USP53Q70EK8 1073 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 PRICKLE2Q7Z3G6 844 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 SPRED1Q7Z699 444 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 VASH2Q86V25 355 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 SLC26A11Q86WA9 606 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 ZFAND4Q86XD8 727 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CNTN4Q8IWV2 1026 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CNPY4Q8N129 248 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 OR4L1Q8NH43 312 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CCL4L1Q8NHW4 92 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 SLC44A1Q8WWI5 657 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 NUS1Q96E22 293 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CDKN2AIPNLQ96HQ2 116 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 PKNOX2Q96KN3 472 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 TMEM74Q96NL1 305 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 PLEKHG4BQ96PX9 1271 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CPNE1Q99829 537 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 LGR4Q9BXB1 951 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 ROPN1BQ9BZX4 212 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-208ENST00000437607 TRIM4Q9C037 500 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 TMEM168Q9H0V1 697 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CENPHQ9H3R5 247 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 ROPN1Q9HAT0 212 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-208ENST00000437607 STARD5Q9NSY2 213 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 WDR70Q9NW82 654 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 FOXJ2Q9P0K8 574 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 VPS18Q9P253 973 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 SLC17A6Q9P2U8 582 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 NFKBIL1Q9UBC1 381 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CRLS1Q9UJA2 301 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 TLDC2A0PJX2 215 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 RGSL1A5PLK6 1076 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 TERTO14746 1132 aaKnown RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 RECQL5O94762 991 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 JMJD7P0C870 316 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 PNLIPP16233 465 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 GLB1P16278 677 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 PSMA3P25788 255 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 ATP5DP30049 168 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 FOXN2P32314 431 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 TRIM23P36406 574 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 PPARGP37231 505 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 ETV3P41162 512 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 SERPINB9P50453 376 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 CSE1LP55060 971 aaKnown RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 CACNG1Q06432 222 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 ITGA9Q13797 1035 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 C14orf28Q4W4Y0 310 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 RNF187Q5TA31 235 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 KIAA0408Q6ZU52 694 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 HSD11B1LQ7Z5J1 315 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 TAF8Q7Z7C8 310 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 SDCCAG8Q86SQ7 713 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 DTX1Q86Y01 620 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 TDRPQ86YL5 185 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 RAVER1Q8IY67 606 aaKnown RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 NRSN1Q8IZ57 195 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 IQCKQ8N0W5 287 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 CBARPQ8N350 705 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 OR56A4Q8NGH8 313 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 ULK4Q96C45 1275 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 DTD2Q96FN9 168 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 TTC1Q99614 292 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 TMEM109Q9BVC6 243 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 STMN4Q9H169 189 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-208ENST00000437607 SEMA6CQ9H3T2 930 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 SMYD2Q9NRG4 433 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 KCTD5Q9NXV2 234 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 LRIT1Q9P2V4 623 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 VPS9D1Q9Y2B5 631 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 PCDHGA4Q9Y5G9 962 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 NFS1Q9Y697 457 aa11.95□□□□□ -0.5
PTPRF-208ENST00000437607 NBASA2RRP1 2371 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 IQANK1A0A1B0GTG1 560 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CXorf49A8MYA2 514 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 B4DGG1 531 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CD3EAPO15446 510 aaKnown RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 RGS16O15492 202 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 B4GAT1O43505 415 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 PIAS1O75925 651 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 KRT38O76015 456 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 SRP72O76094 671 aaKnown RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 C1QAP02745 245 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 FUCA1P04066 466 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 ITGB2P05107 769 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 HOXC4P09017 264 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 FAM87AP0C7U9 286 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CD151P48509 253 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 MAPK10P53779 464 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CYP4F2P78329 520 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 MPP1Q00013 466 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 B4GALNT1Q00973 533 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 PTSQ03393 145 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 ILF2Q12905 390 aaKnown RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 NFATC2Q13469 925 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 C16orf72Q14CZ0 275 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 TEDDM1Q5T9Z0 273 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms