RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TRIM64BA6NI03 449 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 DISC1C4P0D8 188 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ESR1P03372 595 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TRAPPC2P0DI81 140 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TRAPPC2BP0DI82 140 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PRPS1L1P21108 318 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 FPR1P21462 350 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CERCAMQ5T4B2 595 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 FAM122CQ6P4D5 195 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 COMMD2Q86X83 199 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SIMC1Q8NDZ2 872 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 BIN3Q9NQY0 253 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ATG4BQ9Y4P1 393 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 EFCAB7A8K855 629 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 MGAT1P26572 445 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ACTA2P62736 377 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ACTG2P63267 376 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 KIAA0930Q6ICG6 404 aaPredicted RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 NPLOC4Q8TAT6 608 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 FBXO30Q8TB52 745 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 MRPS7Q9Y2R9 242 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 EME2A4GXA9 379 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 LTFP02788 710 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ANTXR2P58335 489 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 E2F1Q01094 437 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 AP5B1Q2VPB7 878 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 FIP1L1Q6UN15 594 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 SLC15A3Q8IY34 581 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PPCDCQ96CD2 204 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 RADILQ96JH8 1075 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TRIB3Q96RU7 358 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 NDC1Q9BTX1 674 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TCF7L1Q9HCS4 588 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 NT5MQ9NPB1 228 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CUEDC1Q9NWM3 386 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 TSPAN16Q9UKR8 245 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TSPAN1O60635 241 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 UBXN7O94888 489 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 AP2A2O94973 939 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CYP17A1P05093 508 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CBSLP0DN79 551 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 MATN1P21941 496 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CBSP35520 551 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CD97P48960 835 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 KHKP50053 298 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 EPHB3P54753 998 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 FASTKD3Q14CZ7 662 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 OR2T5Q6IEZ7 315 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 SNX20Q7Z614 316 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 SVBPQ8N300 66 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PTGR2Q8N8N7 351 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 OR2T29Q8NH02 315 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TSNAXQ99598 290 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 PDP1Q9P0J1 537 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 PCDHGA4Q9Y5G9 962 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 A3GALT2U3KPV4 340 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 SNAPINO95295 136 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PSKH1P11801 424 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ETFAP13804 333 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CEBPGP53567 150 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CXCR4P61073 352 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 FOXO4P98177 505 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 FAM46CQ5VWP2 391 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 SLC27A1Q6PCB7 646 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ANKRD13BQ86YJ7 626 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 DCP2Q8IU60 420 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 MRPL41Q8IXM3 137 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 TMEM199Q8N511 208 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ZNF431Q8TF32 576 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 NACC2Q96BF6 587 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PLEKHA1Q9HB21 404 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 NR2E3Q9Y5X4 410 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 RPS2P15880 293 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 PITPNBP48739 271 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 GSTM4Q03013 218 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ZNF730Q6ZMV8 503 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 SYVN1Q86TM6 617 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 MS4A15Q8N5U1 240 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 LRRC4CQ9HCJ2 640 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 FKBPLQ9UIM3 349 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ERVW-1Q9UQF0 538 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 INMTO95050 263 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PAK4O96013 591 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 ALDH3B2P48448 385 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ATG9AQ7Z3C6 839 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ZNF283Q8N7M2 679 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 BANPQ8N9N5 519 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ZSWIM2Q8NEG5 633 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TXN2Q99757 166 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TAS2R9Q9NYW1 312 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 DUSP10Q9Y6W6 482 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 FAM205CA6NFA0 338 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 AP2A1O95782 977 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 BOP1Q14137 746 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 CDKL4Q5MAI5 379 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 METTL7BQ6UX53 244 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 BEST4Q8NFU0 473 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TAS1R2Q8TE23 839 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 DYNLL2Q96FJ2 89 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 RTFDC1Q9BY42 306 aaPredicted RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms