RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 KRT75O95678 551 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 HLA-DQA2P01906 255 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 ALDH4A1P30038 563 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 HOXC13P31276 330 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 C16orf62Q7Z3J2 963 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 COL26A1Q96A83 441 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 NXNL1Q96CM4 212 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 MRGPRX2Q96LB1 330 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 ATG10Q9H0Y0 220 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 MRPL39Q9NYK5 338 aaKnown RBP12.72□□□□□ -0.37
PTCH1-207ENST00000429896 SORCS3Q9UPU3 1222 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 PLK4O00444 970 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 FFAR2O15552 330 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 GRID2O43424 1007 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 DUSP3P51452 185 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-207ENST00000429896 NADSYN1Q6IA69 706 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 ZNF75CPQ92670 426 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-207ENST00000429896 SPRTNQ9H040 489 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-207ENST00000429896 TBC1D23Q9NUY8 699 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 B4GALT3O60512 393 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 C6P13671 934 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 CLCNKAP51800 687 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 OLIG2Q13516 323 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 ZNF572Q7Z3I7 529 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-207ENST00000429896 RNF148Q8N7C7 305 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 DNASE1L2Q92874 299 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 GFM2Q969S9 779 aaKnown RBP12.72□□□□□ -0.37
PTCH1-207ENST00000429896 ISG20Q96AZ6 181 aaKnown RBP12.72□□□□□ -0.37
PTCH1-207ENST00000429896 KCNK6Q9Y257 313 aa12.72□□□□□ -0.37
PTCH1-207ENST00000429896 BIRC5O15392 142 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 AP2A2O94973 939 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 IL5RAQ01344 420 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 CPSF6Q16630 551 aaKnown RBP eCLIP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 GPRC6AQ5T6X5 926 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 C11orf88Q6PI97 169 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 REXO4Q9GZR2 422 aaKnown RBP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 PAPSS2O95340 614 aaPredicted RBP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 COX7A2P14406 83 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 NQO1P15559 274 aaKnown RBP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 SERPINB1P30740 379 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 KLC1Q07866 573 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 FOXM1Q08050 763 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 CSTF3Q12996 717 aaKnown RBP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 CYLC2Q14093 348 aaPredicted RBP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 SULT1C3Q6IMI6 304 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 RNASE11Q8TAA1 199 aaKnown RBP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 SLC22A18Q96BI1 424 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 MTG2Q9H4K7 406 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 STMN3Q9NZ72 180 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 MAPRE3Q9UPY8 281 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 SPPL2AQ8TCT8 520 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 OR2M4Q96R27 311 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 MYADMQ96S97 322 aa12.71□□□□□ -0.37
PTCH1-207ENST00000429896 COLQQ9Y215 455 aaPredicted RBP12.71□□□□□ -0.37
PTCH1-207ENST00000429896 CAPN8A6NHC0 703 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 AGKQ53H12 422 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 FGD3Q5JSP0 725 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 OTUD3Q5T2D3 398 aaPredicted RBP12.71□□□□□ -0.38
PTCH1-207ENST00000429896 FAM129CQ86XR2 697 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 TMIEQ8NEW7 156 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 PPP3R2Q96LZ3 170 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 CDX2Q99626 313 aaPredicted RBP12.71□□□□□ -0.38
PTCH1-207ENST00000429896 SH3GL2Q99962 352 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 SLC17A9Q9BYT1 436 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.71□□□□□ -0.38
PTCH1-207ENST00000429896 TBC1D17Q9HA65 648 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 MRPS33Q9Y291 106 aaKnown RBP12.71□□□□□ -0.38
PTCH1-207ENST00000429896 A0A1W2PPM1 405 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 CCT8P50990 548 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 KLF1Q13351 362 aaPredicted RBP12.71□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF77Q15935 545 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 EMC10Q5UCC4 262 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 ADGRD1Q6QNK2 874 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 GPR156Q8NFN8 814 aa12.71□□□□□ -0.38
PTCH1-207ENST00000429896 TSPAN8P19075 237 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 COX10Q12887 443 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 YTHDF3Q7Z739 585 aaKnown RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 ADGRG2Q8IZP9 1017 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 DPP10Q8N608 796 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 RELTQ969Z4 430 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 KIFC1Q9BW19 673 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 LIN7AO14910 233 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 CRHR1P34998 444 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 PRKAG1P54619 331 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 EGFLAMQ63HQ2 1017 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 MAPK15Q8TD08 544 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 ATAD3AQ9NVI7 634 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 FAM20BO75063 409 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 IPO13O94829 963 aaKnown RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 ADAM15Q13444 863 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 ZSWIM7Q19AV6 140 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 MTDHQ86UE4 582 aaKnown RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 OXNAD1Q96HP4 312 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 BTBD9Q96Q07 612 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 AARSD1Q9BTE6 412 aaKnown RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 KCNK12Q9HB15 430 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 USP29Q9HBJ7 922 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 MRPS30Q9NP92 439 aaKnown RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 PRKAG3Q9UGI9 489 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 CBSLP0DN79 551 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms