RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 DAPK2Q9UIK4 370 aa13.17□□□□□ -0.3
USP42-203ENST00000426246 URB1O60287 2271 aaKnown RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 PFDN6O15212 129 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 INSIG1O15503 277 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 ADAM12O43184 909 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 TBL1XO60907 577 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 DEAF1O75398 565 aaPredicted RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 NDST3O95803 873 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 ALDH2P05091 517 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 LPOP22079 712 aaPredicted RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 POU1F1P28069 291 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 SLC11A2P49281 568 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 ERVPABLB-1P60509 514 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 PAGE2BQ5JRK9 111 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 ACBD5Q5T8D3 534 aaPredicted RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 KIAA0408Q6ZU52 694 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 R3HCC1LQ7Z5L2 792 aaKnown RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 PELI3Q8N2H9 469 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 LIX1Q8N485 282 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 ARRDC2Q8TBH0 407 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 NRBF2Q96F24 287 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 FUBP3Q96I24 572 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP42-203ENST00000426246 APOLD1Q96LR9 279 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 TSGA13Q96PP4 275 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 CWH43Q9H720 699 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 RC3H2Q9HBD1 1191 aaKnown RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 SEPT3Q9UH03 358 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 LOC100506127A0A0U1RQW1 187 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 TMEM247A6NEH6 219 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 G3V2T6 193 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 CKMP06732 381 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 TCF3P15923 654 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 IL12AP29459 219 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 ATP5C1P36542 298 aaKnown RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 DAB2P98082 770 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 LRRC74AQ0VAA2 488 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 DNASE1L3Q13609 305 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 TGFBIQ15582 683 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 EGFLAMQ63HQ2 1017 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 MICU2Q8IYU8 434 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 DRAXINQ8NBI3 349 aaPredicted RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 FUBP1Q96AE4 644 aaKnown RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 MED8Q96G25 268 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 UBXN10Q96LJ8 280 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 SMG9Q9H0W8 520 aaKnown RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 ZNF696Q9H7X3 374 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 ZNF490Q9ULM2 529 aaPredicted RBP13.16□□□□□ -0.3
USP42-203ENST00000426246 CHD9Q3L8U1 2897 aa13.16□□□□□ -0.3
USP42-203ENST00000426246 TRIM24O15164 1050 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 FADS2O95864 444 aaKnown RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 SLC6A4P31645 630 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 SYT16Q17RD7 645 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 AASDHQ4L235 1098 aaPredicted RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 CYP20A1Q6UW02 462 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 ADGRG5Q8IZF4 528 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 DTWD1Q8N5C7 304 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 ZNF366Q8N895 744 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 ZNF597Q96LX8 424 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 TMEM175Q9BSA9 504 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 TOR3AQ9H497 397 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 CCM2LQ9NUG4 571 aaPredicted RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 FAM92AA1XBS5 289 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 PRAMEF1O95521 474 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 FGF1P05230 155 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 MMP2P08253 660 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 VARSP26640 1264 aaKnown RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 NUP107P57740 925 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 HERC3Q15034 1050 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 FUT10Q6P4F1 479 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 C8orf48Q96LL4 319 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 HOPXQ9BPY8 73 aaPredicted RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 MARCH7Q9H992 704 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 VAPAQ9P0L0 249 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 TLR6Q9Y2C9 796 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 ULK1O75385 1050 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 ATXN1LP0C7T5 689 aaKnown RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 MAP2K4P45985 399 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 CCT8P50990 548 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 SH3BGRP55822 239 aaPredicted RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 SERINC3Q13530 473 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 ZCCHC8Q6NZY4 707 aaKnown RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 DUS1LQ6P1R4 473 aaKnown RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 TRIM74Q86UV6 250 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 TRIM73Q86UV7 250 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 SELENOMQ8WWX9 145 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 TFAP2CQ92754 450 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 EGLN2Q96KS0 407 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 MTERF1Q99551 399 aaKnown RBP13.15□□□□□ -0.3
USP42-203ENST00000426246 TRIM62Q9BVG3 475 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 OSBPL6Q9BZF3 934 aa13.15□□□□□ -0.3
USP42-203ENST00000426246 A0A1W2PP18 115 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 A8MU76 341 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 CLDN7O95471 211 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 CCNA2P20248 432 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 SHMT2P34897 504 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 CAPGP40121 348 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 PPP3CCP48454 512 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 IDH2P48735 452 aaKnown RBP13.14□□□□□ -0.31
USP42-203ENST00000426246 MASP1P48740 699 aa13.14□□□□□ -0.31
USP42-203ENST00000426246 SMAD3P84022 425 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms