RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 PPP1R12AO14974 1030 aaPredicted RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 PMPCBO75439 489 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 CCNYL3P0C7X3 344 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 PECAM1P16284 738 aaPredicted RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 CA4P22748 312 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 CES1P23141 567 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 PTPN4P29074 926 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 CHRNA4P43681 627 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 PGDP52209 483 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 AP1B1Q10567 949 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 RAPSNQ13702 412 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 PTPRCAPQ14761 206 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 RPE65Q16518 533 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 UGT8Q16880 541 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 DNTTIP2Q5QJE6 756 aaKnown RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 DRICH1Q6PGQ1 229 aaPredicted RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 RAVER1Q8IY67 606 aaKnown RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 EFCAB3Q8N7B9 438 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 BEND7Q8N7W2 519 aaPredicted RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 SIDT2Q8NBJ9 832 aaKnown RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 GALNT11Q8NCW6 608 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 SSC4DQ8WTU2 575 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 TADA1Q96BN2 335 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 C19orf60Q96EN9 201 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 CAPZA3Q96KX2 299 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 SLC25A23Q9BV35 468 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 ING2Q9H160 280 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 CHST8Q9H2A9 424 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 MLXIPLQ9NP71 852 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 CASS4Q9NQ75 786 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 FGF21Q9NSA1 209 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 SAE1Q9UBE0 346 aaPredicted RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 FAM8A1Q9UBU6 413 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 EPHA6Q9UF33 1036 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 AMACRQ9UHK6 382 aa12.6□□□□□ -0.39
LINC00339-202ENST00000416769 DRG1Q9Y295 367 aaKnown RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 TEP1Q99973 2627 aaKnown RBP12.6□□□□□ -0.39
LINC00339-202ENST00000416769 A6NL46 340 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 OR2AG2A6NM03 316 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 GAPDHSO14556 408 aaPredicted RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 ZNF189O75820 626 aaPredicted RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 IDSP22304 550 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 FOXL2P58012 376 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 EIF3EP60228 445 aaKnown RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 CDK18Q07002 472 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 TMEM115Q12893 351 aaPredicted RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 ABRQ12979 859 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 CHRNA6Q15825 494 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 CYP1B1Q16678 543 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 WHAMMP3Q1A5X7 153 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 AGAP9Q5VTM2 703 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 WASH2PQ6VEQ5 465 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 LILRA3Q8N6C8 439 aaPredicted RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 AVL9Q8NBF6 648 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 GDAP1Q8TB36 358 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 SLC35B2Q8TB61 432 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 ADAMTS17Q8TE56 1095 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 TFB1MQ8WVM0 346 aaKnown RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 MR1Q95460 341 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 HAUS1Q96CS2 278 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 ZDHHC12Q96GR4 267 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 TCTN2Q96GX1 697 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 NUDT9Q9BW91 350 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 ADGRE3Q9BY15 652 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 MAGEE1Q9HCI5 957 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 PDE7BQ9NP56 450 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 IL26Q9NPH9 171 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 WASH6PQ9NQA3 447 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 IMP3Q9NV31 184 aaKnown RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 SEMA5BQ9P283 1151 aa12.59□□□□□ -0.39
LINC00339-202ENST00000416769 NFKBIL1Q9UBC1 381 aaPredicted RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 R3HDM2Q9Y2K5 976 aaKnown RBP12.59□□□□□ -0.39
LINC00339-202ENST00000416769 C21orf140B9A014 251 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 H7C0C1 242 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 CCDC188H7C350 402 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 LIASO43766 372 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 POP7O75817 140 aaKnown RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 CLDN1O95832 211 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 RBP3P10745 1247 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 STIP1P31948 543 aaKnown RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 CD68P34810 354 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 ATP5OP48047 213 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 KPNA2P52292 529 aaKnown RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 ITGA1P56199 1179 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 CKAP4Q07065 602 aaKnown RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 INPP5JQ15735 1006 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 FAM151BQ6UXP7 276 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 DET1Q7L5Y6 550 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 ZNF572Q7Z3I7 529 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 ZC3H18Q86VM9 953 aaKnown RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 RBMXL3Q8N7X1 1067 aaKnown RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 PRELID2Q8N945 189 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 FDCSPQ8NFU4 85 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 C1orf54Q8WWF1 131 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 ZNF514Q96K75 400 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 INSM2Q96T92 566 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-202ENST00000416769 AP1M1Q9BXS5 423 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 ACSS2Q9NR19 701 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 SMARCAL1Q9NZC9 954 aa12.58□□□□□ -0.4
LINC00339-202ENST00000416769 MRFAP1Q9Y605 127 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms