RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 DDI2Q5TDH0 399 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 BHLHB9Q6PI77 547 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 POTEHQ6S545 545 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CEACAM20Q6UY09 585 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CCNI2Q6ZMN8 369 aaPredicted RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SMG8Q8ND04 991 aaKnown RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 AGBL5Q8NDL9 886 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ZCCHC10Q8TBK6 192 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CENPIQ92674 756 aaPredicted RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 LRIG1Q96JA1 1093 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ACOX2Q99424 681 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ABHD10Q9NUJ1 306 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ADAMTS5Q9UNA0 930 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 MAN2B2Q9Y2E5 1009 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 GSTK1Q9Y2Q3 226 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 RGSL1A5PLK6 1076 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 MKRN2OSH3BPM6 223 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 RETP07949 1114 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 FGFR3P22607 806 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CCNFP41002 786 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 GSSP48637 474 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF423Q2M1K9 1284 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SLC29A4Q7RTT9 530 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CCM2Q9BSQ5 444 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 GANQ9H2C0 597 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 NMUR1Q9HB89 426 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 MARCOQ9UEW3 520 aaPredicted RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 TAGLN3Q9UI15 199 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 FCHO1O14526 889 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 GJA4P35212 333 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 BUD31P41223 144 aaPredicted RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 HNMTP50135 292 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 DAOAP59103 153 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CXADRP78310 365 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ZFP1Q6P2D0 407 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SPATA4Q8NEY3 305 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 STK32AQ8WU08 396 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 EEF1AKMT1Q8WVE0 214 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 HNRNPLLQ8WVV9 542 aaKnown RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SEC14L1Q92503 715 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 PPP1R36Q96LQ0 422 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SMAD5Q99717 465 aaKnown RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 NAT9Q9BTE0 207 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 FOXP3Q9BZS1 431 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 RMND5AQ9H871 391 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SH3BP4Q9P0V3 963 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ANAPC2Q9UJX6 822 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SIGLEC16A6NMB1 481 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 B3GALT2O43825 422 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SCN2BO60939 215 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CTDNEP1O95476 244 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 UMPSP11172 480 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 MIPP30301 263 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 HSD17B2P37059 387 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 RPS7P62081 194 aaKnown RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 RIPPLY1Q0D2K3 151 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ZACNQ401N2 412 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 FAM109BQ6ICB4 259 aaPredicted RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ABHD13Q7L211 337 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 MCOLN2Q8IZK6 566 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ZDHHC14Q8IZN3 488 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 TOR1AIP2Q8NFQ8 470 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 MINDY3Q9H8M7 445 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 IL21RQ9HBE5 538 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 LRRC4CQ9HCJ2 640 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 G3V2T6 193 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 FASP25445 335 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 GDI2P50395 445 aaKnown RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SELENOVP59797 346 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 PGS1Q32NB8 556 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 DUPD1Q68J44 220 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 NCEH1Q6PIU2 408 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SPOCD1Q6ZMY3 1216 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 LRRC34Q8IZ02 419 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF563Q8TA94 476 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 NDRG1Q92597 394 aaKnown RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 VPS33AQ96AX1 596 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 ARRDC3Q96B67 414 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 CCNL2Q96S94 520 aaPredicted RBP7.2□□□□□ -1.26
SCN9A-202ENST00000409435 HERPUD2Q9BSE4 406 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 SLC17A9Q9BYT1 436 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 OPTCQ9UBM4 332 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 HS3ST4Q9Y661 456 aa7.2□□□□□ -1.26
SCN9A-202ENST00000409435 LOC100653049A0A140TA62 436 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 FLRT2O43155 660 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 BUD23O43709 281 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 KRT34O76011 436 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 ITIH1P19827 911 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 UCNP55089 124 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 ALDH6A1Q02252 535 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PYDC2Q56P42 97 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PPIL6Q8IXY8 311 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 CENPLQ8N0S6 344 aaPredicted RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 LRRN4CLQ8ND94 238 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 TSACCQ96A04 125 aaPredicted RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SLC39A3Q9BRY0 314 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 ZSCAN5AQ9BUG6 496 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 GPN1Q9HCN4 374 aaPredicted RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PRDM4Q9UKN5 801 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms