RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CILP2Q8IUL8 1156 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 ALDH16A1Q8IZ83 802 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 NTAN1Q96AB6 310 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 BIRC7Q96CA5 298 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 GLT1D1Q96MS3 346 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 PAQR5Q9NXK6 330 aaPredicted RBP11.77□□□□□ -0.53
HMGB1-206ENST00000405805 SDK1Q7Z5N4 2213 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 PRSS51A0A1B0GVH4 220 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 ANKRD34BA5PLL1 514 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 hCG_2039718K7EN88 272 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 ECI2O75521 394 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 RECQL5O94762 991 aaPredicted RBP11.77□□□□□ -0.53
HMGB1-206ENST00000405805 HIST1H2AGP0C0S8 130 aaPredicted RBP11.77□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF26P17031 533 aaPredicted RBP11.77□□□□□ -0.53
HMGB1-206ENST00000405805 HIST1H2ADP20671 130 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 AXLP30530 894 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 RPS24P62847 133 aaKnown RBP11.77□□□□□ -0.53
HMGB1-206ENST00000405805 HERC3Q15034 1050 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 PAQR9Q6ZVX9 377 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 RFPL4BQ6ZWI9 263 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 GALNT7Q86SF2 657 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 RTL3Q8N8U3 475 aaKnown RBP11.77□□□□□ -0.53
HMGB1-206ENST00000405805 PTERQ96BW5 349 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 HIST1H2AHQ96KK5 128 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 HIST1H2AJQ99878 128 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 H2AFJQ9BTM1 129 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 FKBP14Q9NWM8 211 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 UBA2Q9UBT2 640 aaPredicted RBP11.77□□□□□ -0.53
HMGB1-206ENST00000405805 PCDHGA10Q9Y5H3 936 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 PTCH2Q9Y6C5 1203 aa11.77□□□□□ -0.53
HMGB1-206ENST00000405805 OR1I1O60431 355 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 TPPPO94811 219 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 ATE1O95260 518 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 XPAP23025 273 aaPredicted RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 OR4D2P58180 307 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 SYT16Q17RD7 645 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 TYSND1Q2T9J0 566 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 MARCH8Q5T0T0 291 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 KIAA0319Q5VV43 1072 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 SMYD5Q6GMV2 418 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 THAP5Q7Z6K1 395 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 CAMKK1Q8N5S9 505 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 MINDY2Q8NBR6 621 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 ZMIZ2Q8NF64 920 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 MAT2BQ9NZL9 334 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 SH3BP4Q9P0V3 963 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 COL1A2P08123 1366 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 MRPS6P82932 125 aaKnown RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 PTPRRQ15256 657 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 PABPC1LQ4VXU2 614 aaKnown RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 TTC23Q5W5X9 447 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 RASSF6Q6ZTQ3 369 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 GALNT10Q86SR1 603 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 MFSD6LQ8IWD5 586 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 C2CD4AQ8NCU7 369 aaPredicted RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 NMUR1Q9HB89 426 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 NOX1Q9Y5S8 564 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 MEN1O00255 615 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 PTGESO14684 152 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 MAFKO60675 156 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 GRK3P35626 688 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 DUSP4Q13115 394 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 OR4D1Q15615 310 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 TRIP4Q15650 581 aaPredicted RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 C18orf21Q32NC0 220 aaPredicted RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 INTS6LQ5JSJ4 861 aaKnown RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 PAGE3Q5JUK9 113 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 PDZK1Q5T2W1 519 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 TTC30BQ8N4P2 665 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 SLC15A4Q8N697 577 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 TMEM102Q8N9M5 508 aaPredicted RBP11.76□□□□□ -0.53
HMGB1-206ENST00000405805 C3orf58Q8NDZ4 430 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 PPP1R2P1Q96PQ5 205 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 UGT2B28Q9BY64 529 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 NFKBIZQ9BYH8 718 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 ASB8Q9H765 288 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 IPPKQ9H8X2 491 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 TMEM30AQ9NV96 361 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 CMTM6Q9NX76 183 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 PADI3Q9ULW8 664 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 DOCK5Q9H7D0 1870 aa11.76□□□□□ -0.53
HMGB1-206ENST00000405805 I6L893 689 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 ULK1O75385 1050 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 G6PDP11413 515 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 S100A3P33764 101 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 SOX6P35712 828 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 CDKN1CP49918 316 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 PTGR1Q14914 329 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 NUMA1Q14980 2115 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF284Q2VY69 593 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 R3HCC1LQ7Z5L2 792 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 AMIGO1Q86WK6 493 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OR9Q1Q8NGQ5 310 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 SELENOMQ8WWX9 145 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 GFM1Q96RP9 751 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 MYOCQ99972 504 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 LTB4R2Q9NPC1 389 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OPTCQ9UBM4 332 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 SERPINB7O75635 380 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 CHRM5P08912 532 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms