RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CCDC97Q96F63 343 aaPredicted RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 FEM1AQ9BSK4 669 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 BEGAINQ9BUH8 593 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 DGCR6LQ9BY27 220 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 MAGEH1Q9H213 219 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 PALMDQ9NP74 551 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 VPS9D1Q9Y2B5 631 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 ZFP37Q9Y6Q3 630 aaPredicted RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 ANKRD66B4E2M5 251 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 CFAP99D6REC4 459 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 GMNNO75496 209 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SLC2A4P14672 509 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 HTR1BP28222 390 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 GGT5P36269 586 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 BCAP31P51572 246 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 RPS24P62847 133 aaKnown RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 KCNC4Q03721 635 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 DSC1Q08554 894 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 GTF2H2Q13888 395 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 GRAMD4Q6IC98 578 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 GTF2H2CQ6P1K8 395 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SBSNQ6UWP8 590 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 BTLAQ7Z6A9 289 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 IGFN1Q86VF2 1251 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 ABHD11Q8NFV4 315 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SDCCAG3Q96C92 435 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 RDH12Q96NR8 316 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 TBCDQ9BTW9 1192 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 RAD21L1Q9H4I0 556 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 IPPKQ9H8X2 491 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SCUBE2Q9NQ36 999 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SLC25A37Q9NYZ2 338 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 NUDT4Q9NZJ9 180 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 WARS2Q9UGM6 360 aaKnown RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 ARIH1Q9Y4X5 557 aaPredicted RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 RAI2Q9Y5P3 530 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 DGKBQ9Y6T7 804 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 C16orf96A6NNT2 1141 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 H3BNC9 293 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 IFRD1O00458 451 aaPredicted RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 GSTA4O15217 222 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 TLR5O60602 858 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SERPINB7O75635 380 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 PRKD3O94806 890 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 F11P03951 625 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 MAGEA11P43364 429 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 PIK3CGP48736 1102 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 ISL1P61371 349 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 RPL38P63173 70 aaKnown RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SFSWAPQ12872 951 aaKnown RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 TRAF3Q13114 568 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 FAM174BQ3ZCQ3 159 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 CRTC3Q6UUV7 619 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SPESP1Q6UW49 350 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 TAS2R42Q7RTR8 314 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 PIWIL3Q7Z3Z3 882 aaKnown RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 RTN4RL1Q86UN2 441 aaPredicted RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 AADATQ8N5Z0 425 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 ZNF555Q8NEP9 628 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 FRS2Q8WU20 508 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 RHBDF1Q96CC6 855 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 SLC47A1Q96FL8 570 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 NEURL2Q9BR09 285 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 ACTR8Q9H981 624 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 EXD2Q9NVH0 621 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 PAK1IP1Q9NWT1 392 aaPredicted RBP12.49□□□□□ -0.41
SHMT1-205ENST00000395684 GREB1Q4ZG55 1949 aa12.49□□□□□ -0.41
SHMT1-205ENST00000395684 PTGES3LE9PB15 166 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 STX7O15400 261 aaKnown RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 TBC1D4O60343 1298 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 INMTO95050 263 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 IDUAP35475 653 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 OPRL1P41146 370 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 TPD52P55327 224 aaPredicted RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 OXCT1P55809 520 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 CYP4F3Q08477 520 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 CYP2A13Q16696 494 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 RGS21Q2M5E4 152 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 C5orf22Q49AR2 442 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 CTXN3Q4LDR2 81 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 CLLU1OSQ5K130 101 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 EGFLAMQ63HQ2 1017 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 DNAJC14Q6Y2X3 702 aaPredicted RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 FRA10AC1Q70Z53 315 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 MAGED4Q96JG8 741 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 P2RY12Q9H244 342 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 NSUN3Q9H649 340 aaKnown RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 FARSBQ9NSD9 589 aaKnown RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 USE1Q9NZ43 259 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 AGO1Q9UL18 857 aaKnown RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 GNGT2O14610 69 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 INPPL1O15357 1258 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 KDELR3O43731 214 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 GUCA1CO95843 209 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 ESR1P03372 595 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 PCMT1P22061 227 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 HSPA7P48741 367 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 MAPKAPK3Q16644 382 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 GTDC1Q4AE62 458 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms