RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PENKP01210 267 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PORP16435 677 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 IL7RP16871 459 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 CD247P20963 164 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 MARSP56192 900 aaKnown RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PPP3R1P63098 170 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 EIF5AL1Q6IS14 154 aaKnown RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PDE12Q6L8Q7 609 aaKnown RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 FOXRED2Q8IWF2 684 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PLD5Q8N7P1 536 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 C8orf48Q96LL4 319 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 DUSP16Q9BY84 665 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 MIR1-1HGQ9H1L0 117 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 BEX1Q9HBH7 125 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 DAPL1A0PJW8 107 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TCAF2A6NFQ2 919 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 C9IYK1 514 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 SEPT4O43236 478 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 LAMP2P13473 410 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 VEGFAP15692 232 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 HTR2BP41595 481 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 GJA9P57773 515 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TEX44Q53QW1 395 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 STYK1Q6J9G0 422 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 CHSY3Q70JA7 882 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 DENND1CQ8IV53 801 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PLEKHO2Q8TD55 490 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TTYH2Q9BSA4 534 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 C2orf49Q9BVC5 232 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TTLL2Q9BWV7 592 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PAQR5Q9NXK6 330 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 E9PAM4 449 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ARPC2O15144 300 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 RPP40O75818 363 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 IL7P13232 177 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ITPKBP27987 946 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF132P52740 706 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 BACE1P56817 501 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PSMA6P60900 246 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 GBE1Q04446 702 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 FNDC3BQ53EP0 1204 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CDKL4Q5MAI5 379 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 RAET1GQ6H3X3 334 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF627Q7L945 461 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM86AQ8N2M4 240 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 OR4C6Q8NH72 309 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CD300LFQ8TDQ1 290 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CSPG4P5Q96PW8 444 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF347Q96SE7 839 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 GPR21Q99679 349 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 TMED9Q9BVK6 235 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 LRRC3Q9BY71 257 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM27Q9HBJ8 222 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 FOXD2O60548 495 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PGAM2P15259 253 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 GANABQ14697 944 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 FBXO43Q4G163 708 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 POMZP3Q6PJE2 187 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 XKRXQ6PP77 449 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ADGRD2Q7Z7M1 963 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PRMT6Q96LA8 375 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 OVOS2A0A0J9YW53 1432 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 OVOS2Q6IE36 1432 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CLDN5O00501 218 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ATP5C1P36542 298 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 RPL35P42766 123 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CLK3P49761 638 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 LARS2Q15031 903 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 MEP1AQ16819 746 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZACNQ401N2 412 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 LRRN1Q6UXK5 716 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 FEM1CQ96JP0 617 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 IL4I1Q96RQ9 567 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 KXD1Q9BQD3 176 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 FAM105AQ9NUU6 356 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 YDJCA8MPS7 323 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 TGFB1I1O43294 461 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ABCB7O75027 752 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 RP2O75695 350 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 SLC25A14O95258 325 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ANXA4P09525 319 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 SSR2P43308 183 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 NUDT6P53370 316 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PPP1R8Q12972 351 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF773Q6PK81 442 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZDHHC24Q6UX98 284 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PM20D2Q8IYS1 436 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 DDTLA6NHG4 134 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PKMP14618 531 aaKnown RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 MMP8P22894 467 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 F8A1P23610 371 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 MVKQ03426 396 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 SP140Q13342 867 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 SNX20Q7Z614 316 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 DNERQ8NFT8 737 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 DNASE1L2Q92874 299 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 LRRC58Q96CX6 371 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 AP1S3Q96PC3 154 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 SLC39A3Q9BRY0 314 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms