RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 FBXO32Q969P5 355 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 LRRC58Q96CX6 371 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 MED30Q96HR3 178 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 DGCR6LQ9BY27 220 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 OR2B2Q9GZK3 357 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 MARCH7Q9H992 704 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 NTN4Q9HB63 628 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 POLE4Q9NR33 117 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 DDIT4Q9NX09 232 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 PCDHGA8Q9Y5G5 932 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 MYO16Q9Y6X6 1858 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 H3BNC9 293 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 UPK1BO75841 260 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 ALDOCP09972 364 aaKnown RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 THRBP10828 461 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 STMN1P16949 149 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 EIF2DP41214 584 aaKnown RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 KRT6CP48668 564 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CLCN4P51793 760 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 NKX2-5P52952 324 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 PLD1Q13393 1074 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 GPM6BQ13491 265 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 ADPRMQ3LIE5 342 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 ZIK1Q3SY52 487 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 UGT3A2Q3SY77 523 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CERCAMQ5T4B2 595 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 ZNF697Q5TEC3 545 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CHRDL2Q6WN34 429 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 DNAJB7Q7Z6W7 309 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 LYSMD2Q8IV50 215 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 SLC41A1Q8IVJ1 513 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CEP97Q8IW35 865 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 HS6ST3Q8IZP7 471 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CHDHQ8NE62 594 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 DYNC2LI1Q8TCX1 351 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 C2orf15Q8WU43 125 aaKnown RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 NTAN1Q96AB6 310 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 SLC22A12Q96S37 553 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 BTBD2Q9BX70 525 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 TRIM54Q9BYV2 358 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 IL1RL2Q9HB29 575 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 PCDH12Q9NPG4 1184 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 HCFC1R1Q9NWW0 138 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 STAP1Q9ULZ2 295 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 SNX5Q9Y5X3 404 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 C2orf78A6NCI8 922 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 GOLGA8CPA6NN73 597 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 ZNF99A8MXY4 864 aaPredicted RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 UPK1AO00322 258 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 ANGPT2O15123 496 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 IPO13O94829 963 aaKnown RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 INMTO95050 263 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 HPRP00739 348 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 IGLV3-25P01717 112 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 C8AP07357 584 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 MSL3P1P0C860 447 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 MTHFD1P11586 935 aaKnown RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 BMP1P13497 986 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 GJA1P17302 382 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 CAPN3P20807 821 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 PRKACBP22694 351 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 YBX1P67809 324 aaKnown RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 ZNF33AQ06730 810 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 SCAPQ12770 1279 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 SMARCB1Q12824 385 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 FOXD4Q12950 439 aaPredicted RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 ARTNQ5T4W7 220 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 MON1AQ86VX9 555 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 RIMKLAQ8IXN7 391 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 LGI2Q8N0V4 545 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 TMEM125Q96AQ2 219 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 CYP2S1Q96SQ9 504 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 MLPHQ9BV36 600 aaPredicted RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 CHID1Q9BWS9 393 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 PRO3102Q9H379 93 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 NOL6Q9H6R4 1146 aaKnown RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 ANKHQ9HCJ1 492 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 FBRSL1Q9HCM7 1045 aaKnown RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 TBC1D14Q9P2M4 693 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 CRNNQ9UBG3 495 aaPredicted RBP10.96□□□□□ -0.65
CUX1-204ENST00000393824 FBXW11Q9UKB1 542 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 ATG2AQ2TAZ0 1938 aa10.96□□□□□ -0.65
CUX1-204ENST00000393824 ZFC3H1O60293 1989 aaKnown RBP10.96□□□□□ -0.66
CUX1-204ENST00000393824 NEMP2A6NFY4 417 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 A6NL46 340 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 UBXN8O00124 270 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 NR5A2O00482 541 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 SCAMP3O14828 347 aaKnown RBP10.96□□□□□ -0.66
CUX1-204ENST00000393824 ZBTB24O43167 697 aaPredicted RBP10.96□□□□□ -0.66
CUX1-204ENST00000393824 HOXC11O43248 304 aaPredicted RBP10.96□□□□□ -0.66
CUX1-204ENST00000393824 KCNK2O95069 426 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 MATN4O95460 622 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 ZDHHC11BP0C7U3 371 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 IL7RP16871 459 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 NMBRP28336 390 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 CCR2P41597 374 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 CASP3P42574 277 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 GSK3BP49841 420 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms