RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CDK15Q96Q40 435 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ZNF382Q96SR6 550 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 SLC12A9Q9BXP2 914 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 OR2AG1Q9H205 316 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 NOL11Q9H8H0 719 aaKnown RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 TIMM22Q9Y584 194 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 TNPO3Q9Y5L0 923 aaKnown RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 A8MUI8 341 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 PIP5K1BO14986 540 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 KPNA5O15131 536 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 RNASEH1O60930 286 aaKnown RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ATG13O75143 517 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 S100BP04271 92 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 PREPP48147 710 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 RBBP7Q16576 425 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ZNF776Q68DI1 518 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 SULT1C3Q6IMI6 304 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 LETMD1Q6P1Q0 360 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 CYB5D1Q6P9G0 228 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 UBE2R2Q712K3 238 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 LONP2Q86WA8 852 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 RALGPS2Q86X27 583 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ZNF547Q8IVP9 402 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 OR2T3Q8NH03 318 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 HMGCLL1Q8TB92 370 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ASZ1Q8WWH4 475 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 LENG8Q96PV6 779 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 EGFL8Q99944 293 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 KLC4Q9NSK0 619 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 GIMAP2Q9UG22 337 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 STK38LQ9Y2H1 464 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 PCYT1BQ9Y5K3 369 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 COPG1Q9Y678 874 aaKnown RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 SLC5A10A0PJK1 596 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 MEI4A8MW99 385 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 QSOX1O00391 747 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 GSC2O15499 205 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 MBTPS2O43462 519 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 OR4F21O95013 312 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 KLF8O95600 359 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-202ENST00000372405 PIK3R1P27986 724 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 CPOXP36551 454 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 RPIAP49247 311 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 GTF2H2Q13888 395 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 FGL2Q14314 439 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 GTF2H2CQ6P1K8 395 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 GPRIN3Q6ZVF9 776 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 NEK10Q6ZWH5 1172 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 SKA2Q8WVK7 121 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-202ENST00000372405 FOXJ1Q92949 421 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 FAM131CQ96AQ9 280 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 COX14Q96I36 57 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 CCM2Q9BSQ5 444 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 CD244Q9BZW8 370 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 EPHX3Q9H6B9 360 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 AKTIPQ9H8T0 292 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 PARVBQ9HBI1 364 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 ATXN10Q9UBB4 475 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 ZFR2Q9UPR6 939 aaKnown RBP13.5□□□□□ -0.25
PTPRF-202ENST00000372405 BTRCQ9Y297 605 aa13.5□□□□□ -0.25
PTPRF-202ENST00000372405 LOC100653049A0A140TA62 436 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 GYG2O15488 501 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 NARSO43776 548 aaKnown RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 RNASEH2AO75792 299 aaKnown RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 KRT34O76011 436 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 MATN4O95460 622 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 ASGR2P07307 311 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 C8GP07360 202 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 TRAF3Q13114 568 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 WSCD2Q2TBF2 565 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 BCL7AQ4VC05 210 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 TCHHL1Q5QJ38 904 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 TRIM39Q9HCM9 518 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 ARL15Q9NXU5 204 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 WWOXQ9NZC7 414 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 COLQQ9Y215 455 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 MGRN1O60291 552 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 CCNT2O60583 730 aaKnown RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 TM7SF2O76062 418 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 PCDH8O95206 1070 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 ENO2P09104 434 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 ALDOCP09972 364 aaKnown RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 LINC00032P0C843 101 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 UROSP10746 265 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 COX4I1P13073 169 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 HOXB2P14652 356 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 ZNF8P17098 575 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 EPORP19235 508 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 PDHA2P29803 388 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 PBLDP30039 288 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 PRDX6P30041 224 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 PKNOX1P55347 436 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 CDKL1Q00532 357 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 SP140Q13342 867 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 SMAD4Q13485 552 aaKnown RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 PNCKQ6P2M8 343 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 ADAMTSL4Q6UY14 1074 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 TMPRSS6Q8IU80 811 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 CDYL2Q8N8U2 506 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 OR4F6Q8NGB9 312 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms