RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 TBC1D25Q3MII6 688 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 TTMPQ5BVD1 217 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 UBE2UQ5VVX9 321 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 TMEM126BQ8IUX1 230 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 LENG8Q96PV6 779 aaPredicted RBP7.25□□□□□ -1.25
VPS13A-202ENST00000357409 EHD1Q9H4M9 534 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 SEMA3GQ9NS98 782 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 THAP1Q9NVV9 213 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 GALPQ9UBC7 116 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PCYOX1Q9UHG3 505 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 RPTORQ8N122 1335 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 AZGP1P25311 298 aaKnown RBP7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PTPN4P29074 926 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 STARP49675 285 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 TSPAN5P62079 268 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 SLC3A1Q07837 685 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF844Q08AG5 666 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 SOWAHAQ2M3V2 549 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 MED27Q6P2C8 311 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PRR22Q8IZ63 422 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PTCD2Q8WV60 388 aaKnown RBP7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PLEKHA1Q9HB21 404 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 LRTM1Q9HBL6 345 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 HCSTQ9UBK5 93 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 OR1A2Q9Y585 309 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 MEN1O00255 615 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 TPPPO94811 219 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 ADRA1BP35368 520 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 CCR10P46092 362 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PREPP48147 710 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 XKR4Q5GH76 650 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 SPIN3Q5JUX0 258 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PAGE2Q7Z2X7 111 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PEG10Q86TG7 708 aaKnown RBP7.25□□□□□ -1.25
VPS13A-202ENST00000357409 CCNJLQ8IV13 435 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 TWIST2Q8WVJ9 160 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 CXorf56Q9H5V9 222 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 HCN3Q9P1Z3 774 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 hCG_1818297A0A087WSY0 165 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 LSM8O95777 96 aaKnown RBP7.25□□□□□ -1.25
VPS13A-202ENST00000357409 ADH5P11766 374 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 CLCN7P51798 805 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 PSMD4P55036 377 aaKnown RBP7.25□□□□□ -1.25
VPS13A-202ENST00000357409 SSTP61278 116 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 DUSP28Q4G0W2 176 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 ZBTB2Q8N680 514 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 TNFRSF25Q93038 417 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 APOPT1Q96IL0 206 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 MINDY3Q9H8M7 445 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 MORF4L1Q9UBU8 362 aa7.25□□□□□ -1.25
VPS13A-202ENST00000357409 TMEM265A0A087WTH1 108 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SMIM35A0A1B0GVV1 85 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 CIB4A0PJX0 185 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 MRPL3P09001 348 aaKnown RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 VSX2P58304 361 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 METTL3Q86U44 580 aaKnown RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 TMPRSS6Q8IU80 811 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 TOP6BLQ8N6T0 577 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF570Q96NI8 536 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 ZFP3Q96NJ6 502 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 ZSCAN5AQ9BUG6 496 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 TMEM27Q9HBJ8 222 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 COPS7AQ9UBW8 275 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 NFKBIEO00221 500 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 LAMTOR5O43504 91 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SASH3O75995 380 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 COX4I1P13073 169 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 VIPR1P32241 457 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 DGKQP52824 942 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 RGS8P57771 180 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SAMD4BQ5PRF9 694 aaKnown RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 PLPPR4Q7Z2D5 763 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF615Q8N8J6 731 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SMOXQ9NWM0 555 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 UBAP1Q9NZ09 502 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 AJAP1Q9UKB5 411 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 TAF4O00268 1085 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 TULP3O75386 442 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 LYNP07948 512 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 TPP2P29144 1249 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 MNDAP41218 407 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 DSG2Q14126 1118 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SLC1A5Q15758 541 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 DEFB133Q30KQ1 61 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 CAPN13Q6MZZ7 669 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 NKAPQ8N5F7 415 aaKnown RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 QRFPRQ96P65 431 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 APOL4Q9BPW4 351 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 KLRF1Q9NZS2 232 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SALL4Q9UJQ4 1053 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SLCO1B7G3V0H7 640 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 H3BNH8 94 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 GZMAP12544 262 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 KCNJ2P63252 427 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 ZACNQ401N2 412 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF549Q6P9A3 640 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 C8orf59Q8N0T1 100 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-202ENST00000357409 COX18Q8N8Q8 333 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 SPPL2BQ8TCT7 592 aa7.24□□□□□ -1.25
VPS13A-202ENST00000357409 BPIFB1Q8TDL5 484 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms