RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 UCK2Q9BZX2 261 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 IL1RAPQ9NPH3 570 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 ARL8BQ9NVJ2 186 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 ERVK-19Q9WJR5 959 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 KCNU1A8MYU2 1149 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 RPS3P23396 243 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP47-202ENST00000339865 CDH12P55289 794 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 NUP54Q7Z3B4 507 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 ACBD4Q8NC06 268 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 HSPBAP1Q96EW2 488 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 OSMRQ99650 979 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 OR12D3Q9UGF7 316 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 PCDHB5Q9Y5E4 795 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 DNMBPQ6XZF7 1577 aa12.68□□□□□ -0.38
USP47-202ENST00000339865 TSTD3H0UI37 97 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 OIP5O43482 229 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 TLX3O43711 291 aaPredicted RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 IFNW1P05000 195 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 PRKAR1BP31321 381 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CAPZA1P52907 286 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ZNF155Q12901 538 aaPredicted RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 TARDBPQ13148 414 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP47-202ENST00000339865 QPCTQ16769 361 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ZC3HC1Q86WB0 502 aaKnown RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 RBM15BQ8NDT2 890 aaKnown RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 GPRC5AQ8NFJ5 357 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 SLC2A14Q8TDB8 520 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 LRTM1Q9HBL6 345 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 PTPRKQ15262 1439 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 HOXB6P17509 224 aaKnown RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 GLRA2P23416 452 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 RTP1P59025 263 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ST3GAL4Q11206 333 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 SLC43A3Q8NBI5 491 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 C2orf49Q9BVC5 232 aaPredicted RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 ADAM28Q9UKQ2 775 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 PCDHGA8Q9Y5G5 932 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 NPEPPSL1A6NEC2 478 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 C19orf81C9J6K1 198 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CTPS1P17812 591 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 IL12BP29460 328 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 RYKP34925 604 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CCDC58Q4VC31 144 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CLEC12AQ5QGZ9 265 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 GPR153Q6NV75 609 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ZNF676Q8N7Q3 588 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 LRRC46Q96FV0 321 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 RAD9AQ99638 391 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 OR10A4Q9H209 315 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 H3BRB1 525 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 TGM6O95932 706 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 PET100P0DJ07 73 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 GPD2P43304 727 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 GMPSP49915 693 aaPredicted RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 FXYD6P3P58550 94 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 HSPB3Q12988 150 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 BSNDQ8WZ55 320 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 BRF2Q9HAW0 419 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 MARCH2Q9P0N8 246 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 MTRRQ9UBK8 725 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 NARFQ9UHQ1 456 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 C12orf71A8MTZ7 269 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 KCNJ13O60928 360 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CYP3A5P20815 502 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CLCN7P51798 805 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ANKRD23Q86SG2 305 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 LAS2Q8IYD9 372 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 FRZBQ92765 325 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 EXOSC8Q96B26 276 aaKnown RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 VCPIP1Q96JH7 1222 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 C19orf12Q9NSK7 152 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 IMP3Q9NV31 184 aaKnown RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 E5RJQ4 531 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CSTF2P33240 577 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP47-202ENST00000339865 KIR3DL1P43629 444 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 LAMTOR4Q0VGL1 99 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ZNF268Q14587 947 aaPredicted RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 MAD2L1BPQ15013 274 aaPredicted RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 RANBP3LQ86VV4 465 aaPredicted RBP12.67□□□□□ -0.38
USP47-202ENST00000339865 TIGD4Q8IY51 512 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 DEFB106AQ8N104 65 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 MALSU1Q96EH3 234 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 ABCA10Q8WWZ4 1543 aa12.67□□□□□ -0.38
USP47-202ENST00000339865 CNTNAP5Q8WYK1 1306 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 TEX13CA0A0J9YWL9 993 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 POLR1CO15160 346 aaPredicted RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 CTHP32929 405 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 CXCR3P49682 368 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 BDH1Q02338 343 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 SWT1Q5T5J6 900 aaKnown RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 CASTOR1Q8WTX7 329 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 BIN3Q9NQY0 253 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 ABI3Q9P2A4 366 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 SPIN1Q9Y657 262 aaPredicted RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 ZNF99A8MXY4 864 aaPredicted RBP12.66□□□□□ -0.38
USP47-202ENST00000339865 XPNPEP2O43895 674 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 PRR5P85299 388 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 KLHDC10Q6PID8 442 aa12.66□□□□□ -0.38
USP47-202ENST00000339865 JAGN1Q8N5M9 183 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms