RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LRRC23Q53EV4 343 aaPredicted RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 MTDHQ86UE4 582 aaKnown RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 KCNV2Q8TDN2 545 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 MVB12BQ9H7P6 319 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 POLR3HQ9Y535 204 aaPredicted RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 DLEC1Q9Y238 1755 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 ABLIM1O14639 778 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 SLC25A12O75746 678 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 OAS1P00973 400 aaKnown RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 TRPC1P48995 793 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 MAPK12P53778 367 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 CPTPQ5TA50 214 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 CCSAPQ6IQ19 270 aaPredicted RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 TMEM126BQ8IUX1 230 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 PIWIL2Q8TC59 973 aaKnown RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 HCN3Q9P1Z3 774 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 SUCOQ9UBS9 1254 aaKnown RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 C19orf25Q9UFG5 118 aaPredicted RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 PLXNB2O15031 1838 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 HIST1H2ABP04908 130 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 UROSP10746 265 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 CLCQ05315 142 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 CCINQ13939 588 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 HIST3H2AQ7L7L0 130 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 GPR180Q86V85 440 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 CPNE8Q86YQ8 564 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 NXPE1Q8N323 547 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 UBR7Q8N806 425 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 DLG3Q92796 817 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 RIT1Q92963 219 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 HIST1H2ACQ93077 130 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 TRAF6Q9Y4K3 522 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 VAV1P15498 845 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 TSPAN8P19075 237 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 ACRV1P26436 265 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 BDKRB1P46663 353 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 SLC6A11P48066 632 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 CYTH1Q15438 398 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 NPAS3Q8IXF0 933 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 NR1H4Q96RI1 486 aaPredicted RBP9.99□□□□□ -0.81
USP54-201ENST00000339859 ARHGAP9Q9BRR9 750 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 PDE7BQ9NP56 450 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 FETUBQ9UGM5 382 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 SLCO3A1Q9UIG8 710 aa9.99□□□□□ -0.81
USP54-201ENST00000339859 NR2F1P10589 423 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 JAK1P23458 1154 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 MRPS22P82650 360 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 FAM98BQ52LJ0 330 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 DCAF12L1Q5VU92 463 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 KIAA0895LQ68EN5 471 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 AADATQ8N5Z0 425 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 OR4E2Q8NGC2 313 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 KCNN1Q92952 543 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CPEB1Q9BZB8 566 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 NOP53Q9NZM5 478 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 OR51F1A6NGY5 319 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CSNK1DP48730 415 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 IRAK1P51617 712 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 LCP2Q13094 533 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 PRPF38BQ5VTL8 546 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 FBXO15Q8NCQ5 510 aaPredicted RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 TOE1Q96GM8 510 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 AGAP2Q99490 1192 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 TDRD1Q9BXT4 1180 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 RNF38Q9H0F5 515 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 TRIM39Q9HCM9 518 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 DGKBQ9Y6T7 804 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CAPN14A8MX76 684 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CPN2P22792 545 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 SLC6A4P31645 630 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 GTF2A1P52655 376 aaPredicted RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 SEC24CP53992 1094 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 TERF2Q15554 542 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 Q6ZVL8 140 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 SPPL2AQ8TCT8 520 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 EME1Q96AY2 570 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 TPD52L3Q96J77 140 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 KIFC1Q9BW19 673 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 UGT2B28Q9BY64 529 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 HPS4Q9NQG7 708 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 TMX2-CTNND1H3BSU7 103 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 FAM155BO75949 473 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 HNRNPLP14866 589 aaKnown RBP eCLIP9.98□□□□□ -0.813e-8■■■■□ 26.7
USP54-201ENST00000339859 TARSP26639 723 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 PSMD4P55036 377 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 CSTF3Q12996 717 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 SLC13A2Q13183 592 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 MAPKAPK3Q16644 382 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 C9orf64Q5T6V5 341 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 ZNF544Q6NX49 715 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 ZDHHC1Q8WTX9 485 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 RBM18Q96H35 190 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 EFCAB11Q9BUY7 163 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 DUSP23Q9BVJ7 150 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CCDC167Q9P0B6 97 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 ENOPH1Q9UHY7 261 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 FBXW2Q9UKT8 454 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 PLLPQ9Y342 182 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 PCDHGA2Q9Y5H1 932 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms