RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 AAK1Q2M2I8 961 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 INO80DQ53TQ3 878 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TMPRSS11AQ6ZMR5 421 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FAM92BQ6ZTR7 304 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 USP53Q70EK8 1073 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ANKRD46Q86W74 232 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PDZD9Q8IXQ8 264 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PGBD3Q8N328 593 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CCDC24Q8N4L8 307 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 C1orf52Q8N6N3 182 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ANKRD52Q8NB46 1076 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 AKR7LQ8NHP1 331 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FKBP10Q96AY3 582 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FAF2Q96CS3 445 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CCDC17Q96LX7 622 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FEM1AQ9BSK4 669 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PTDSS2Q9BVG9 487 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 BCL2L14Q9BZR8 327 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ANKRD19PQ9H560 264 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 REEP4Q9H6H4 257 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CRLF2Q9HC73 371 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GSN-AS1Q9NRJ2 163 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MARCOQ9UEW3 520 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MAGEL2Q9UJ55 1249 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 STAP1Q9ULZ2 295 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SNCAIPQ9Y6H5 919 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 HEG1Q9ULI3 1381 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 DCCP43146 1447 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CCDC195A0A1B0GUA6 201 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 F5H6K3 240 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ADAM10O14672 748 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PLIN3O60664 434 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TRIM13O60858 407 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 INMTO95050 263 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 AGR2O95994 175 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF8P17098 575 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CRHBPP24387 322 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 KLRC2P26717 231 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 LAP3P28838 519 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CASP4P49662 377 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CTBSQ01459 385 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FOXO1Q12778 655 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CHRNA2Q15822 529 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SGCAQ16586 387 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MINDY4Q4G0A6 757 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RIPPLY2Q5TAB7 128 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 AFMIDQ63HM1 303 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MCATQ8IVS2 390 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 C2orf69Q8N8R5 385 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ISL2Q96A47 359 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF300Q96RE9 604 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RBM4BQ9BQ04 359 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RBM4Q9BWF3 364 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CCDC86Q9H6F5 360 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GKN1Q9NS71 199 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GJB4Q9NTQ9 266 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CACNA2D2Q9NY47 1150 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GAB2Q9UQC2 676 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RAPGEF6Q8TEU7 1601 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 A0A0G2JMP0 313 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 ASB14A6NK59 587 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 IMPA2O14732 288 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 DCXO43602 365 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 VPS26AO75436 327 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 PAPSS2O95340 614 aaPredicted RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 ACSM4P0C7M7 580 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 CDH13P55290 713 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 IFITM3Q01628 133 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 DCAF12L1Q5VU92 463 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 USP17L1Q7RTZ2 530 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 NECAB2Q7Z6G3 386 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 C10orf107Q8IVU9 208 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 GOT1L1Q8NHS2 421 aaPredicted RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 AGR3Q8TD06 166 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 YIPF6Q96EC8 236 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 HERPUD2Q9BSE4 406 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 SAGE1Q9NXZ1 904 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 MAGED2Q9UNF1 606 aaPredicted RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 CSADQ9Y600 493 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 GLYATL1P3A0A0U1RQE8 302 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 C1orf196B1AJZ1 125 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 GREM1O60565 184 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 PROSCO94903 275 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 FTLP02792 175 aaPredicted RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 CLTBP09497 229 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 TYRP14679 529 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 BAG6P46379 1132 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 ROR1Q01973 937 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 MLLT1Q03111 559 aaPredicted RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 SIX1Q15475 284 aaPredicted RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 GPR19Q15760 415 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 TIGD6Q17RP2 521 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 MTHFSDQ2M296 383 aaKnown RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 HKDC1Q2TB90 917 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 IQCCQ4KMZ1 466 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 FAM98BQ52LJ0 330 aaKnown RBP4.09□□□□□ -1.75
NEDD4-201ENST00000338963 RABL3Q5HYI8 236 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 LCN8Q6JVE9 175 aa4.09□□□□□ -1.75
NEDD4-201ENST00000338963 UQCC3Q6UW78 93 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms