RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 GPR52Q9Y2T5 361 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 OAS3Q9Y6K5 1087 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 STARD9Q9P2P6 4700 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 OTOGQ6ZRI0 2925 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 BAZ2BQ9UIF8 2168 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 A8MV72 311 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 H7BY64 318 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 TULP2O00295 520 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 TRAFD1O14545 582 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CYB561D2O14569 222 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 SUN1O94901 812 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 RASAL1O95294 804 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 HSPA4LO95757 839 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 LSM8O95777 96 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CGAP01215 116 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DANCRP0C864 163 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 IGHV4-31P0DP07 118 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 SDSP20132 328 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 SPINK2P20155 84 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CHRM3P20309 590 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 TBXAS1P24557 533 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CTSSP25774 331 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 HNRNPH1P31943 449 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ZNF143P52747 638 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CDH15P55291 814 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ST8SIA6P61647 398 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 POLR2LP62875 67 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 NIPAL4Q0D2K0 466 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 STIM1Q13586 685 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 GANABQ14697 944 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 KIR2DS3Q14952 304 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 C16orf72Q14CZ0 275 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 SLC1A5Q15758 541 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 MEP1AQ16819 746 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DDR2Q16832 855 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 LINC01559Q495D7 138 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 PYCR3Q53H96 274 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 XKR9Q5GH70 373 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 BEX5Q5H9J7 111 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 C10orf62Q5T681 223 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 METRNLQ641Q3 311 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ANKRD40Q6AI12 368 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 PAPD4Q6PIY7 484 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ZNF627Q7L945 461 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 GALNT7Q86SF2 657 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 TRIM50Q86XT4 487 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 EMC1Q8N766 993 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 C9orf106Q8NAJ2 232 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ZMIZ2Q8NF64 920 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 C10orf105Q8TEF2 133 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CACNG8Q8WXS5 425 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 MAML1Q92585 1016 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 NDRG1Q92597 394 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 GTF3AQ92664 365 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 MYLPFQ96A32 169 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DTD2Q96FN9 168 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 RSRC1Q96IZ7 334 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 HEPHQ9BQS7 1158 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 C2orf49Q9BVC5 232 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 TRABDQ9H4I3 376 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ZFAND3Q9H8U3 227 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 G6PC2Q9NQR9 355 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 INTS7Q9NVH2 962 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 TBCCD1Q9NVR7 557 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 P4HTMQ9NXG6 502 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 GIN1Q9NXP7 522 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CNIH4Q9P003 139 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 C19orf25Q9UFG5 118 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 APOBEC3BQ9UH17 382 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 L1RE1Q9UN81 338 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DOLKQ9UPQ8 538 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DLGAP4Q9Y2H0 992 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 PVALEFA0A1B0GWK0 134 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 ANKRD62A6NC57 917 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 CLCA1A8K7I4 914 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 DEFB108AA8MXU0 73 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 H7C0S8 307 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 BIN1O00499 593 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 RASGRF2O14827 1237 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 DCLK1O15075 740 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 ZSCAN9O15535 394 aaPredicted RBP1.48□□□□□ -2.17
LINC00643-201ENST00000334389 LRRTM2O43300 516 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 HUS1O60921 280 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 MITFO75030 526 aaPredicted RBP1.48□□□□□ -2.17
LINC00643-201ENST00000334389 JRKO75564 520 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 SMNDC1O75940 238 aaKnown RBP eCLIP1.48□□□□□ -2.17
LINC00643-201ENST00000334389 TSPAN9O75954 239 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 PLA2G4BP0C869 781 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 COX6A1P12074 109 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 JUNBP17275 347 aaPredicted RBP1.48□□□□□ -2.17
LINC00643-201ENST00000334389 MX1P20591 662 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 DLSTP36957 453 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 PTPN9P43378 593 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 NKX6-1P78426 367 aaPredicted RBP1.48□□□□□ -2.17
LINC00643-201ENST00000334389 ROR2Q01974 943 aaKnown RBP1.48□□□□□ -2.17
LINC00643-201ENST00000334389 GUCA2AQ02747 115 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 PPARDQ03181 441 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 MFGE8Q08431 387 aaPredicted RBP1.48□□□□□ -2.17
LINC00643-201ENST00000334389 Q0VFX4 171 aa1.48□□□□□ -2.17
LINC00643-201ENST00000334389 MAP4K2Q12851 820 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms