RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 RPS3P23396 243 aaKnown RBP eCLIP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 MPSTP25325 297 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 PDHA2P29803 388 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 CSTF2P33240 577 aaKnown RBP eCLIP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 ITGA8P53708 1063 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 ARL4CP56559 192 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 ERVPABLB-1P60509 514 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 DHX9Q08211 1270 aaKnown RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 CALCOCO2Q13137 446 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 TUBB2AQ13885 445 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 BRD3Q15059 726 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 PLCL1Q15111 1095 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 TBC1D25Q3MII6 688 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 BBS9Q3SYG4 887 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 XKR5Q6UX68 686 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 ZNF572Q7Z3I7 529 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 PROSER1Q86XN7 944 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 CILP2Q8IUL8 1156 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 AGBL5Q8NDL9 886 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 TFGQ92734 400 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 LRRC39Q96DD0 335 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 ZDHHC12Q96GR4 267 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 CCDC74BQ96LY2 380 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 RMDN2Q96LZ7 410 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 TUBB2BQ9BVA1 445 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 P2RY12Q9H244 342 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 KIR3DX1Q9H7L2 352 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 MVB12BQ9H7P6 319 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 THSD1Q9NS62 852 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 C20orf96Q9NUD7 363 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 INTS10Q9NVR2 710 aaKnown RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 ZMIZ1Q9ULJ6 1067 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 SNX24Q9Y343 169 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 UTP11Q9Y3A2 253 aaKnown RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 LOXL2Q9Y4K0 774 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 MAP1BP46821 2468 aaKnown RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 SLC5A10A0PJK1 596 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 TNFSF15O95150 251 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 ESR1P03372 595 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 THRAP10827 490 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 ITGB6P18564 788 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 AOAHP28039 575 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 FMO4P31512 558 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 CCR7P32248 378 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 CSF2RBP32927 897 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 RPL21P46778 160 aaKnown RBP13.67□□□□□ -0.22
LIMS1-201ENST00000332345 PREPP48147 710 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 ADARP55265 1226 aaKnown RBP13.67□□□□□ -0.22
LIMS1-201ENST00000332345 C2orf54Q08AI8 447 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 BOP1Q14137 746 aaKnown RBP13.67□□□□□ -0.22
LIMS1-201ENST00000332345 HIF1AQ16665 826 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 TYSND1Q2T9J0 566 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 SPANXN3Q5MJ09 141 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 SNAP47Q5SQN1 464 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 PDZD3Q86UT5 571 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 AGGF1Q8N302 714 aaeCLIP13.67□□□□□ -0.222e-8■■□□□ 12.2
LIMS1-201ENST00000332345 RCBTB1Q8NDN9 531 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 ACVR1CQ8NER5 493 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 GSDMBQ8TAX9 411 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 PRR11Q96HE9 360 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-201ENST00000332345 TRIM56Q9BRZ2 755 aaKnown RBP13.67□□□□□ -0.22
LIMS1-201ENST00000332345 RAB33BQ9H082 229 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.67□□□□□ -0.22
LIMS1-201ENST00000332345 TMEM9Q9P0T7 183 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 WHRNQ9P202 907 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 EPHA6Q9UF33 1036 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 SLC24A2Q9UI40 661 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 FREM2Q5SZK8 3169 aa13.67□□□□□ -0.22
LIMS1-201ENST00000332345 A0A1W2PNU3 283 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-201ENST00000332345 IQCF5A8MTL0 148 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 A8MU76 341 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 TAF4O00268 1085 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 TOX3O15405 576 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-201ENST00000332345 CAPN5O15484 640 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-201ENST00000332345 RAD51CO43502 376 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 S1PR4O95977 384 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 C9P02748 559 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 ITGA2BP08514 1039 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 EIF3BP55884 814 aaKnown RBP13.66□□□□□ -0.22
LIMS1-201ENST00000332345 HSPA14Q0VDF9 509 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 C16orf72Q14CZ0 275 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 TMED2Q15363 201 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 WHAMMP3Q1A5X7 153 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 MSS51Q4VC12 460 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 TMEM164Q5U3C3 297 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 ZNF470Q6ECI4 717 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 ARMC6Q6NXE6 501 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 NAPRTQ6XQN6 538 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 OTOAQ7RTW8 1153 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 ARHGAP22Q7Z5H3 698 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 PHC3Q8NDX5 983 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 LCN9Q8WX39 176 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 LPGAT1Q92604 370 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 BIRC8Q96P09 236 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 FAM167BQ9BTA0 163 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 RAB17Q9H0T7 212 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 IL1RAPL1Q9NZN1 696 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 OGFRQ9NZT2 677 aa13.66□□□□□ -0.22
LIMS1-201ENST00000332345 PISDQ9UG56 409 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms